Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.2e-46 189.5 97 100.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 2.8e-43 178.3 97 93.8
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.1e-42 174.9 97 92.8
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.2e-40 168.7 97 88.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 6.4e-40 167.2 97 88.7
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 6.4e-40 167.2 97 86.6
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 4.2e-39 164.5 97 86.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 4.2e-39 164.5 97 86.6
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.2e-39 164.5 97 86.6
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.6e-38 162.5 97 85.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 3.5e-38 161.4 95 85.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.7e-37 159.1 91 86.8
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 3.9e-37 157.9 99 83.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 3.9e-37 157.9 99 83.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 3.9e-37 157.9 99 83.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.9e-37 157.9 95 84.2
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.9e-37 157.9 95 84.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 5.1e-37 157.5 89 87.6
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-37 157.5 89 87.6
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-37 157.5 89 87.6
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-37 157.5 89 87.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.8e-34 149.1 91 81.3
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 9.9e-33 143.3 80 88.8
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 9.9e-33 143.3 80 88.8
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 9.9e-33 143.3 80 88.8
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 7.1e-31 137.1 86 77.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 6.0e-30 134.0 95 69.5
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 7.9e-30 133.7 95 68.4
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 3.9e-29 131.3 94 71.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.1e-29 131.0 95 68.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 6.7e-29 130.6 95 69.5
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 6.7e-29 130.6 95 68.4
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 6.7e-29 130.6 89 70.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.5e-28 129.4 95 67.4
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.5e-28 129.4 76 86.8
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.9e-28 129.0 94 69.1
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-28 129.0 89 70.8
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.5e-28 128.6 81 76.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 77.5
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.3e-28 128.3 80 77.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.3e-28 128.3 79 78.5
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.3e-28 128.3 94 70.2
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 4.3e-28 127.9 80 78.8
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 5.6e-28 127.5 93 66.7
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 7.4e-28 127.1 81 77.8
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 7.4e-28 127.1 80 76.2
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 9.6e-28 126.7 95 67.4
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 9.6e-28 126.7 94 67.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 9.6e-28 126.7 84 71.4
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.3e-27 126.3 99 65.7
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.3e-27 126.3 81 74.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.3e-27 126.3 85 72.9
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 95 63.2
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.6e-27 125.9 100 65.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.1e-27 125.6 81 72.8
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.1e-27 125.6 87 71.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.1e-27 125.6 80 77.5
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.1e-27 125.6 80 77.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.1e-27 125.6 80 77.5
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.8e-27 125.2 97 73.2
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.8e-27 125.2 94 68.1
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.8e-27 125.2 95 66.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.7e-27 124.8 86 68.6
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.7e-27 124.8 94 68.1
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 4.8e-27 124.4 87 70.1
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 8.1e-27 123.6 93 66.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 8.1e-27 123.6 89 69.7
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 8.1e-27 123.6 94 68.1
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.1e-27 123.6 80 71.2
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.1e-26 123.2 94 66.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.4e-26 122.9 80 71.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.4e-26 122.9 81 72.8
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.4e-26 122.9 81 72.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.8e-26 122.5 89 67.4
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.8e-26 122.5 79 73.4
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.8e-26 122.5 80 76.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.8e-26 122.5 89 69.7
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.8e-26 122.5 95 61.1
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.8e-26 122.5 81 71.6
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.4e-26 122.1 89 67.4
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.1e-26 121.7 94 67.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.1e-26 121.7 81 71.6
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 4.0e-26 121.3 89 67.4
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 4.0e-26 121.3 87 72.4
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.9e-26 120.6 89 67.4
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.9e-26 120.6 95 64.2
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 9.0e-26 120.2 81 70.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 9.0e-26 120.2 81 71.6
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.2e-25 119.8 80 68.8
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-25 119.8 104 59.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-25 119.8 100 62.0
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.0e-25 119.0 84 64.3
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 3.4e-25 118.2 98 62.2
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.5e-25 117.9 84 65.5
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 5.8e-25 117.5 80 71.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 7.6e-25 117.1 81 70.4
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-24 116.3 91 61.5
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.3e-24 116.3 80 73.8
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.2e-24 115.5 74 78.4
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.2e-24 115.5 74 78.4
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.2e-24 115.5 88 64.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 2.9e-24 115.2 76 73.7
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 89 62.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.9e-24 115.2 99 59.6
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 98 60.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.9e-24 115.2 100 61.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.8e-24 114.8 76 75.0
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.4e-24 114.0 76 73.7
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.4e-24 114.0 76 73.7
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.4e-24 114.0 76 73.7
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.4e-23 112.8 76 73.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-23 112.5 71 78.9
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.4e-23 112.1 76 71.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 5.5e-23 110.9 76 71.1
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 5.5e-23 110.9 74 77.0
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.1e-23 110.5 82 62.2
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.2e-22 109.8 80 71.2
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.6e-22 109.4 76 71.1
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.1e-22 109.0 77 68.8
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.7e-22 108.6 102 61.8
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 3.5e-22 108.2 80 68.8
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.6e-22 107.8 81 66.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 7.9e-22 107.1 76 68.4
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.3e-21 106.3 80 65.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-21 106.3 82 64.6
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.3e-21 105.5 76 68.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.9e-21 104.8 75 70.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.7e-21 104.0 80 63.8
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 6.7e-21 104.0 82 56.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.1e-18 95.1 73 67.1
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 5.3e-18 94.4 75 65.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.4e-17 91.7 80 61.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 4.5e-17 91.3 78 57.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.8e-17 90.9 79 57.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.8e-17 90.9 78 60.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.6e-17 90.5 79 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.8e-16 88.2 90 52.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.9e-15 85.9 72 59.7
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.3e-12 74.7 66 54.5
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-12 73.9 52 67.3
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-12 73.9 52 67.3
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.4e-12 73.9 48 68.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 3.7e-11 71.6 78 48.7
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.8e-10 69.3 51 60.8
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 6.1e-06 54.3 40 62.5


User provided reference genes

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