Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 3.7e-183 645.6 587 100.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.7e-172 610.1 587 91.1
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 7.8e-165 584.7 584 93.5
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.8e-161 573.5 590 91.9
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.0e-156 557.8 587 89.6
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.0e-156 556.2 587 90.1
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.1e-154 550.1 587 88.8
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.2e-152 544.3 590 89.7
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.4e-152 542.7 587 89.4
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.3e-151 540.8 563 92.0
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.1e-142 511.1 562 90.6
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.1e-134 484.6 644 75.6
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.6e-120 436.8 518 91.7
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 4.5e-120 436.0 587 79.7
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.5e-111 405.2 587 73.8
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.7e-109 400.2 587 76.0
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 4.6e-109 399.4 587 75.6
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.1e-105 386.3 585 70.6
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.5e-104 384.4 587 71.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 5.9e-104 382.5 587 71.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 3.6e-101 373.2 585 74.4
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.3e-100 370.5 587 71.9
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.0e-100 370.2 583 71.7
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.5e-99 367.9 587 71.6
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.8e-98 363.6 587 71.2
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 3.1e-97 360.1 585 71.1
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 4.1e-97 359.8 583 71.9
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 9.1e-97 358.6 583 74.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.2e-95 354.0 584 64.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.9e-95 353.6 587 68.5
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 5.0e-95 352.8 589 67.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 4.2e-94 349.7 583 63.5
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.8e-92 344.4 585 69.6
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.1e-91 341.7 583 68.4
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.1e-89 335.1 587 67.5
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 5.0e-87 326.2 593 65.8
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 6.5e-87 325.9 583 71.5
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.9e-86 324.3 590 64.2
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 2.5e-86 323.9 602 66.9
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.6e-85 320.1 585 53.0
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.0e-84 318.5 587 73.3
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.8e-84 317.8 322 63.4
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.5e-83 314.7 587 66.3
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.4e-83 313.5 576 58.5
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 7.5e-83 312.4 507 72.8
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 9.8e-83 312.0 585 66.7
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.3e-82 311.6 587 66.6
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.7e-82 311.2 587 70.5
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.7e-82 310.1 593 65.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 7.0e-81 305.8 507 68.0
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 3.5e-80 303.5 587 63.7
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 7.7e-80 302.4 609 63.5
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.5e-78 298.1 587 67.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.5e-78 297.4 595 61.7
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.5e-78 297.4 587 64.4
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.1e-77 294.3 532 69.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 2.7e-77 293.9 587 64.4
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 6.1e-77 292.7 609 65.2
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 8.0e-77 292.4 590 54.9
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 3.0e-76 290.4 587 67.5
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 6.3e-74 282.7 566 68.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 8.3e-74 282.3 585 64.4
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 5.9e-72 276.2 507 58.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.0e-71 275.4 446 76.7
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 3.8e-71 273.5 321 60.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.1e-70 271.9 507 66.3
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.5e-70 271.6 594 62.1
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.5e-70 271.6 558 60.6
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.5e-70 270.8 584 64.4
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.6e-70 269.6 419 58.2
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 5.6e-70 269.6 687 58.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.8e-69 267.3 585 62.6
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.8e-69 267.3 585 64.3
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.3e-68 264.2 566 69.6
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 8.9e-68 262.3 587 63.4
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.5e-67 261.5 604 62.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.3e-66 258.5 632 60.4
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 4.9e-66 256.5 589 62.6
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.4e-65 254.2 587 60.1
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 4.1e-65 253.4 587 61.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 5.4e-65 253.1 584 62.8
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.2e-64 251.9 560 59.8
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.6e-64 251.5 598 56.2
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.0e-63 248.8 584 62.3
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 1.1e-62 245.4 622 53.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 6.2e-61 239.6 588 61.4
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 4.0e-60 236.9 564 61.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.7e-58 230.3 586 63.3
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.4e-57 227.6 415 57.6
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.0e-56 224.6 588 59.2
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.7e-56 224.2 607 60.6
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.9e-55 220.3 328 59.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.9e-55 220.3 582 58.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 6.6e-55 219.5 588 60.9
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 6.6e-55 219.5 596 56.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.1e-54 218.8 315 54.9
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 4.3e-54 216.9 564 61.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 7.5e-51 206.1 303 52.8
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.9e-50 204.1 561 37.4
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 8.3e-50 202.6 590 57.3
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 8.9e-44 182.6 225 59.6
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 8.4e-42 176.0 544 57.9
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 7.3e-38 162.9 586 55.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 2.4e-33 147.9 200 61.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 6.6e-31 139.8 148 54.7
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-25 122.1 122 65.6
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.7e-23 113.2 75 70.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 76 71.1
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 75 72.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 75 72.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 5.6e-22 110.2 75 70.7
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.6e-21 108.6 266 32.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-21 108.6 147 63.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-21 108.6 147 63.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-21 108.6 147 63.9
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.1e-21 106.3 99 58.6
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 8.7e-15 86.3 101 74.3
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 3.3e-14 84.3 60 63.3
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.1e-12 79.3 40 95.0
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.4e-12 78.2 152 40.1
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.3e-12 77.0 76 47.4
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 6.9e-12 76.6 54 66.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.5e-11 75.5 166 33.7
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 7.6e-11 73.2 97 71.1
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 2.2e-10 71.6 238 43.7
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.0e-07 62.8 317 27.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 5.7e-06 57.0 124 32.3


User provided reference genes

Program Settings