Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.3e-179 634.0 569 100.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.1e-136 491.5 492 67.5
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 6.9e-136 488.8 363 87.6
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.3e-129 468.0 360 86.7
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.5e-127 461.1 357 86.3
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.6e-124 451.1 357 84.0
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 8.7e-123 445.3 352 81.8
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.5e-122 444.5 362 79.8
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.3e-121 441.4 364 79.7
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.2e-121 440.7 362 79.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.2e-121 440.7 362 79.6
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.9e-118 430.3 362 78.7
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.5e-109 400.6 352 77.6
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 3.0e-107 393.7 324 81.8
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.3e-73 282.0 309 60.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.7e-71 274.2 444 62.6
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 7.8e-71 272.7 462 51.5
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.7e-70 271.6 427 60.7
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 2.3e-70 271.2 427 54.1
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 2.3e-70 271.2 427 56.7
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 2.5e-69 267.7 297 60.6
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.5e-69 267.7 297 60.6
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 3.3e-69 267.3 313 61.7
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 4.3e-69 266.9 297 61.6
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 7.3e-69 266.2 431 59.9
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 3.6e-68 263.8 301 59.8
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 6.2e-68 263.1 442 36.7
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 2.2e-65 254.6 266 66.2
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 2.2e-65 254.6 266 66.2
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.2e-65 254.6 431 45.9
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 8.3e-65 252.7 424 66.3
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.2e-63 248.8 297 58.2
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 2.0e-63 248.1 425 63.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-62 245.4 425 60.5
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.7e-62 245.0 427 60.2
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 3.9e-62 243.8 445 55.7
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.1e-61 242.3 262 64.5
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.9e-61 241.5 326 56.7
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.2e-60 238.8 429 62.5
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.8e-60 237.7 409 68.5
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.8e-60 237.7 266 63.5
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 3.6e-60 237.3 430 52.8
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.8e-59 235.0 268 66.0
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 5.2e-59 233.4 268 63.8
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.5e-58 231.9 267 62.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 4.4e-58 230.3 430 54.2
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.3e-57 228.8 277 59.9
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.3e-57 226.1 267 61.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.3e-57 226.1 267 61.4
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.1e-56 225.7 298 51.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 5.4e-56 223.4 442 60.2
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.2e-55 222.2 268 60.1
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 4.6e-55 220.3 249 64.3
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 4.6e-55 220.3 259 62.2
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 6.0e-55 219.9 267 61.4
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.9e-54 217.2 259 61.4
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.5e-53 215.3 259 61.0
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.9e-53 214.9 268 62.3
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 7.3e-53 213.0 386 44.0
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.2e-52 212.2 250 67.2
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.7e-52 210.3 429 60.6
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.1e-51 209.1 480 55.2
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.1e-51 209.1 447 58.6
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.4e-51 208.8 263 61.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.3e-51 208.0 297 54.9
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 5.2e-51 206.8 298 53.0
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 5.8e-50 203.4 282 57.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.7e-49 201.8 301 52.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.7e-49 201.8 258 61.2
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.7e-49 201.8 282 55.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 4.9e-49 200.3 441 59.2
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 8.4e-49 199.5 261 57.1
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.9e-48 198.4 275 57.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.2e-47 195.7 266 58.3
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.6e-47 195.3 258 57.8
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 3.0e-46 191.0 414 40.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 6.9e-43 179.9 393 46.3
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.4e-42 177.6 386 55.2
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 3.4e-42 177.6 271 54.2
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.7e-41 175.3 386 42.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 8.4e-41 172.9 227 60.4
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.9e-40 171.8 278 54.0
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.2e-39 169.1 224 60.7
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.7e-38 165.2 391 66.2
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.5e-37 162.2 391 65.5
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.5e-37 161.4 220 62.7
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 9.6e-37 159.5 231 60.2
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.6e-36 158.7 218 64.2
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.6e-36 158.7 220 57.7
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 6.9e-35 153.3 150 52.7
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.2e-34 152.5 328 46.3
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 4.5e-34 150.6 273 49.8
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 5.8e-34 150.2 325 42.5
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 8.4e-33 146.4 387 47.3
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 9.3e-32 142.9 220 58.2
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.2e-31 142.5 150 48.7
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.7e-31 141.4 255 51.8
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 7.9e-31 139.8 217 38.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-28 132.1 227 56.4
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.3e-25 122.5 415 27.2
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 2.5e-21 108.2 218 44.0
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 5.6e-21 107.1 270 29.3
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-20 105.9 84 57.1
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.7e-17 95.5 221 30.8
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 5.1e-14 84.0 55 67.3
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 4.3e-13 80.9 39 92.3
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 4.1e-11 74.3 163 26.4
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 3.4e-10 71.2 59 67.8
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.2e-09 68.6 55 58.2
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.2e-09 68.6 55 58.2
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.2e-09 68.6 54 55.6
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 3.8e-09 67.8 48 60.4
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 5.5e-08 63.9 208 24.5
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.1e-07 60.5 39 56.4
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.3e-06 58.5 61 50.8
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 3.0e-06 58.2 39 61.5


User provided reference genes

Program Settings