Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1875.1 944 100.0
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1642.1 943 87.8
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1611.3 944 86.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1608.2 944 86.4
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1607.8 944 86.5
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1604.3 944 86.2
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1592.0 948 86.1
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1588.2 947 85.5
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1561.2 921 86.0
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1559.3 947 84.2
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1493.4 956 80.1
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1482.6 953 79.4
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1481.8 950 79.3
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1466.8 968 78.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1466.4 957 79.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1393.3 915 78.4
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1363.2 950 74.2
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1298.9 781 84.5
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1267.3 962 66.9
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1250.0 958 67.0
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1241.1 914 68.5
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1235.7 904 69.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1232.2 904 68.3
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1226.5 956 65.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1224.2 951 65.7
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1223.8 953 65.4
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 961 64.8
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 905 67.4
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1214.5 896 68.2
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 961 64.3
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 961 64.4
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1212.2 908 67.2
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1211.4 954 65.1
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1209.9 912 67.0
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1208.0 912 66.9
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 912 65.8
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 905 67.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 919 65.6
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1203.0 923 66.2
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1202.2 963 64.5
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 904 68.0
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 962 64.4
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1199.5 893 68.0
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1199.1 962 64.3
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1196.8 881 67.3
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1195.6 873 69.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1195.3 889 66.9
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1194.1 899 66.4
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1193.7 988 62.9
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1192.2 906 66.7
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1191.8 914 67.0
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1190.6 896 66.6
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 920 66.4
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1188.7 944 64.5
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1187.9 896 66.7
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1186.4 914 66.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1186.4 923 65.3
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 908 65.7
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 904 66.0
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 882 66.7
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1178.3 927 64.3
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1177.5 892 66.3
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1177.5 976 62.6
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1177.2 933 64.2
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1177.2 914 65.6
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1174.8 932 64.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1174.8 904 66.2
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1174.8 927 64.2
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1172.9 907 65.3
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1169.1 914 65.1
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 900 65.4
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1159.4 913 65.0
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1158.3 901 65.6
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1156.4 1000 61.2
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1151.0 915 63.9
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1146.0 882 65.2
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1141.7 906 64.6
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1139.4 907 65.2
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1124.0 811 69.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1122.8 942 62.3
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1116.7 926 62.4
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1114.0 802 69.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1109.7 915 62.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1106.7 887 64.4
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1102.4 906 61.8
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1101.7 917 63.1
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1100.5 878 63.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1089.7 822 65.8
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1088.2 885 61.9
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1086.6 920 60.5
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.2e-309 1065.1 897 62.7
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.3e-307 1059.7 958 59.5
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 8.1e-305 1050.4 914 59.4
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.6e-287 992.3 904 57.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 4.3e-282 974.9 933 57.2
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 1.7e-278 963.0 552 86.2
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 7.9e-276 954.1 873 54.6
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.2e-260 903.7 900 51.1
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 3.7e-249 865.5 846 55.6
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.2e-241 839.7 526 79.1
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.1e-234 817.4 596 68.3
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.2e-223 780.8 677 61.0
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.8e-222 775.8 573 68.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.6e-218 763.1 573 67.5
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 6.4e-209 731.9 590 64.1
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 6.6e-206 721.8 910 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 5.6e-189 665.6 647 55.2
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.0e-183 645.6 516 65.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 8.1e-180 635.2 703 48.2
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 4.2e-176 622.9 875 43.3
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 4.3e-173 612.8 442 67.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 8.4e-169 598.6 406 71.7
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.3e-156 558.1 393 69.7
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 8.2e-132 475.7 289 84.1
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.3e-116 425.2 347 64.6
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.9e-105 387.5 265 72.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 3.5e-90 337.4 281 63.7
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.8e-78 296.6 337 51.6
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 3.4e-77 294.3 238 60.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 3.5e-74 284.3 216 67.1
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 3.6e-63 247.7 172 69.8
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 7.1e-59 233.4 253 49.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 3.1e-46 191.4 216 47.2
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.5e-36 157.1 232 46.1
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 6.7e-33 147.1 95 75.8
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.1e-30 137.9 167 52.7
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 7.4e-24 117.1 398 25.9
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-23 114.4 265 34.0
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 5.1e-17 94.4 58 81.0
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 5.7e-16 90.9 82 53.7
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 9.7e-16 90.1 100 55.0
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.4e-09 69.7 68 54.4
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-07 62.8 37 81.1
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 2.4e-06 58.9 112 35.7
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 7.0e-06 57.4 31 83.9


User provided reference genes

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