Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.9e-272 939.9 488 100.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.3e-152 543.9 539 62.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.0e-133 481.1 540 57.2
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.2e-133 479.9 540 56.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.8e-133 479.2 541 56.4
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.8e-133 479.2 541 56.4
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.8e-133 479.2 541 56.4
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 6.5e-133 478.4 531 57.8
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.0e-130 469.5 489 58.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.8e-130 468.0 533 55.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.8e-128 463.0 514 56.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.4e-127 459.9 538 54.1
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.0e-122 442.6 526 54.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.6e-121 439.9 499 53.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.0e-110 403.7 483 53.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.0e-97 360.5 498 46.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.2e-80 303.9 532 39.7
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.1e-79 301.6 494 43.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 3.6e-75 286.6 535 38.7
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.2e-71 273.5 520 36.9
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.3e-71 271.9 539 36.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.0e-70 269.2 520 36.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.1e-68 265.0 520 36.2
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 5.6e-68 262.7 532 37.4
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-66 258.5 500 35.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-66 258.5 500 35.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.1e-66 258.5 536 35.6
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.4e-66 258.1 530 37.0
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 4.0e-66 256.5 520 36.2
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 5.3e-66 256.1 500 38.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 6.9e-66 255.8 482 36.5
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 6.9e-66 255.8 520 36.2
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.6e-65 253.8 508 37.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.6e-65 252.3 522 35.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.0e-64 251.9 536 34.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.8e-64 250.0 532 36.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 8.4e-64 248.8 552 34.4
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.1e-63 248.4 492 34.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.5e-63 247.3 543 34.6
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.2e-63 246.9 524 37.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.2e-62 245.0 426 38.3
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.1e-62 244.2 546 35.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.7e-62 243.8 473 36.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.5e-62 243.4 516 37.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 4.6e-62 243.0 457 35.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.3e-61 240.7 535 33.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 5.1e-61 239.6 530 34.2
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.7e-61 239.2 520 35.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.1e-60 238.4 514 35.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.1e-60 238.4 498 35.7
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.5e-60 238.0 547 34.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.3e-60 236.9 532 33.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 3.3e-60 236.9 568 33.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.3e-60 236.9 534 32.4
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 9.6e-60 235.3 520 36.2
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.3e-59 235.0 539 35.6
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.3e-59 235.0 545 33.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.3e-59 235.0 408 38.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.1e-59 234.2 492 34.3
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.8e-59 233.8 499 33.3
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.3e-59 232.6 521 32.8
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.1e-58 231.9 532 33.3
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.1e-58 231.9 515 35.7
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.1e-58 231.9 547 34.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.1e-58 231.9 559 34.3
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.1e-58 230.3 466 35.2
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.1e-58 230.3 452 34.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 6.9e-58 229.2 562 32.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.0e-58 228.8 530 33.8
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.0e-58 228.8 581 33.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.2e-57 228.4 560 32.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.4e-57 226.9 424 34.4
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.9e-56 223.8 435 34.3
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.8e-56 223.4 533 34.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.0e-56 223.0 590 31.4
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.1e-55 221.9 524 33.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.4e-55 221.5 562 33.1
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 4.2e-55 219.9 553 31.8
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.7e-54 217.2 490 34.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.7e-54 217.2 455 34.1
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 3.6e-54 216.9 436 35.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.6e-54 216.5 516 33.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 7.9e-54 215.7 531 32.8
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 7.9e-54 215.7 490 32.4
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.3e-53 214.9 487 32.6
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.8e-53 214.5 437 33.0
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.3e-53 214.2 499 33.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.0e-53 213.8 422 33.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 3.9e-53 213.4 490 34.3
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.9e-53 213.4 505 32.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 6.7e-53 212.6 529 33.1
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 8.7e-53 212.2 415 34.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.5e-52 211.5 584 31.2
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.9e-52 211.1 480 32.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 5.7e-52 209.5 284 40.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.7e-52 208.8 506 32.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.2e-51 207.6 554 30.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.7e-51 206.8 504 32.1
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.8e-51 206.5 522 33.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.8e-51 206.5 579 30.1
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-49 201.1 550 30.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.6e-49 200.7 420 33.8
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.8e-48 196.8 292 37.3
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.4e-47 194.9 570 30.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.9e-45 186.8 417 31.7
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.0e-44 184.5 517 30.8
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.6e-44 184.1 472 30.9
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 7.4e-44 182.6 464 33.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.1e-42 177.2 461 33.8
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.1e-42 177.2 461 33.8
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.1e-42 177.2 461 33.8
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 2.2e-40 171.0 461 33.2
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 2.2e-40 171.0 461 33.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.6e-38 163.7 237 38.4
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 9.7e-36 155.6 433 32.1
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.2e-33 148.7 401 33.4
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 5.0e-32 143.3 325 35.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.6e-28 131.0 326 37.4
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.7e-27 127.1 371 34.8
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.7e-27 127.1 176 40.3
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 7.0e-26 122.9 138 43.5
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.7e-25 120.9 230 33.9
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.3e-24 118.6 320 32.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-22 112.1 321 31.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.0e-21 109.0 273 34.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.2e-21 106.7 288 32.3
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.1e-18 97.4 344 26.2
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-17 95.5 331 24.8
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 4.5e-17 93.6 241 29.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.0e-16 92.4 365 28.2
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.7e-16 91.7 214 30.4
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.2e-15 87.0 234 26.9
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.2e-15 86.3 276 26.1
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.2e-14 85.5 403 26.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.2e-13 80.1 91 40.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.2e-13 80.1 91 40.7
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.4e-12 77.4 113 38.9
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.8e-11 74.3 123 34.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.4e-10 71.2 366 23.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.6e-07 60.1 87 44.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.2e-06 58.9 297 23.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-06 57.8 316 24.7


User provided reference genes

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