Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.0e-253 878.6 444 100.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.9e-232 808.9 444 92.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.5e-232 808.5 442 93.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.5e-221 772.7 441 89.6
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.9e-219 765.8 444 89.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 6.4e-212 740.7 442 85.5
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 6.2e-207 724.2 469 80.8
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-206 723.0 439 85.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 5.1e-201 704.5 425 84.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.5e-200 702.2 444 84.0
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 8.2e-191 670.6 393 86.0
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.1e-182 641.7 442 74.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-181 640.2 447 73.4
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 7.7e-181 637.5 435 74.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.5e-180 634.4 444 73.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.6e-178 629.8 434 73.3
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.1e-178 629.4 434 73.0
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-177 626.3 434 73.0
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 9.7e-176 620.5 434 72.6
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.3e-175 617.8 434 71.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 7.2e-171 604.4 437 68.9
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 9.4e-171 604.0 444 69.1
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 6.1e-170 601.3 440 70.2
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.4e-169 600.1 435 70.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.0e-169 599.0 444 68.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 3.9e-169 598.6 444 68.5
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.1e-168 597.0 442 68.6
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.5e-168 596.7 434 71.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.3e-168 595.5 445 69.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 7.4e-168 594.3 437 70.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 7.4e-168 594.3 434 70.7
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.3e-167 593.6 439 68.3
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.7e-167 592.0 445 69.7
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.2e-167 590.9 440 69.5
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.1e-166 590.5 445 68.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.1e-166 590.5 445 69.4
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-166 590.5 382 76.2
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.4e-166 589.3 444 67.6
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.2e-165 587.0 434 68.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.2e-165 587.0 435 69.4
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-165 587.0 445 69.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.2e-165 587.0 434 68.0
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.0e-165 586.3 445 67.6
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.6e-165 585.9 446 67.7
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-165 585.9 445 69.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.5e-165 585.5 442 68.3
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.5e-165 585.1 444 68.5
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.9e-165 584.7 434 68.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.0e-164 583.9 442 67.9
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.7e-164 583.2 446 68.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.9e-164 582.4 436 70.4
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.9e-163 579.7 434 68.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 7.2e-163 577.8 437 67.3
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.2e-163 577.8 440 67.7
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.4e-163 577.4 447 68.5
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.1e-162 576.2 435 67.4
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 6.1e-162 574.7 422 69.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.0e-161 572.0 386 72.3
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 6.7e-161 571.2 434 67.1
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.2e-159 566.2 442 65.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.7e-159 565.5 439 66.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.3e-159 564.7 441 65.5
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.4e-158 563.5 434 65.4
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.1e-158 562.4 434 68.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 3.1e-158 562.4 444 65.5
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.2e-157 560.5 438 64.4
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.7e-157 559.3 425 65.9
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 3.5e-157 558.9 438 64.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 5.9e-157 558.1 438 66.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.0e-156 557.4 466 62.2
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.3e-156 557.0 442 66.7
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.7e-156 556.6 444 65.3
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 3.2e-155 552.4 444 64.2
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.2e-155 552.4 435 65.3
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.7e-154 548.5 459 62.5
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 6.8e-153 544.7 449 62.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.0e-152 543.1 434 65.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.7e-152 541.6 430 65.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 2.2e-151 539.7 423 66.0
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.3e-151 537.7 395 69.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 7.0e-150 534.6 444 63.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.6e-149 533.5 360 72.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.7e-149 532.7 458 63.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.7e-149 532.7 444 63.5
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.5e-149 532.3 436 63.3
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.5e-149 532.3 435 63.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 7.7e-149 531.2 371 70.4
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-147 527.3 439 63.3
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.9e-147 526.6 435 63.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.7e-146 521.9 419 62.3
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.0e-145 520.8 451 61.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 6.8e-145 518.1 405 63.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 5.7e-144 515.0 469 59.3
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 8.3e-143 511.1 402 64.7
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.7e-141 506.1 431 59.9
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 6.6e-140 501.5 400 64.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 8.6e-140 501.1 420 61.2
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 9.5e-139 497.7 406 62.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 6.1e-138 495.0 401 63.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 8.0e-138 494.6 431 58.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 8.0e-138 494.6 365 72.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.8e-137 493.4 444 58.1
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.0e-136 490.0 444 58.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.4e-134 483.0 373 63.8
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.4e-134 481.9 438 59.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 4.6e-133 478.8 439 58.1
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 7.5e-128 461.5 436 56.7
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 7.8e-125 451.4 394 58.9
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.2e-121 438.7 379 61.2
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 8.3e-119 431.4 462 52.8
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.4e-118 429.9 402 57.5
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.5e-115 419.9 300 70.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.6e-114 416.0 229 91.7
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.4e-113 414.1 336 62.2
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.1e-106 390.2 371 56.6
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.4e-105 387.5 447 48.1
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 9.0e-105 384.8 260 72.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 4.9e-103 379.0 347 56.8
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 6.6e-100 368.6 348 57.2
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 3.6e-98 362.8 410 48.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 9.6e-91 338.2 193 89.1
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.6e-85 320.9 361 49.3
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.9e-78 297.4 230 65.2
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.5e-78 297.0 403 44.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.2e-77 294.7 353 46.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.5e-75 287.7 212 69.3
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.5e-67 261.2 367 43.9
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 3.4e-64 250.0 172 70.3
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.2e-62 243.4 441 36.7
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.4e-52 211.5 108 97.2
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.6e-45 186.8 194 50.0
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 8.0e-45 185.7 194 52.1
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.5e-38 164.1 513 27.3
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 3.0e-36 157.1 128 58.6
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.3e-31 141.0 118 60.2
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 8.6e-31 139.0 118 58.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 3.7e-26 123.6 95 62.1
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 7.8e-24 115.9 237 33.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 8.6e-23 112.5 352 25.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.3e-22 110.2 87 60.9
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.8e-20 102.8 106 55.7
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.2e-16 92.0 163 36.2
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.6e-16 91.7 120 50.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-12 78.6 105 44.8
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.8e-12 76.3 123 39.8
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 9.2e-09 65.9 99 42.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 6.0e-08 63.2 53 58.5
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.8e-08 62.8 50 64.0
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.3e-07 61.2 40 67.5
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 5.1e-07 60.1 40 67.5


User provided reference genes

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