Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 2694.8 1385 100.0
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 2418.7 1390 89.4
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 2414.8 1391 89.7
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 2410.6 1394 89.3
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 2402.1 1390 89.1
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 2374.0 1395 87.9
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2362.4 1388 88.2
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 2348.9 1404 87.1
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 2339.7 1390 87.4
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2328.1 1391 87.1
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 2222.2 1409 83.0
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1987.6 1399 75.9
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1567.4 1414 60.3
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1567.4 1423 59.5
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1560.8 1424 59.2
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1557.7 1442 59.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1532.7 1439 59.5
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1529.6 1447 58.1
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1529.2 1423 57.8
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1515.4 1379 59.2
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1513.4 1414 58.4
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1509.6 1422 58.6
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1492.6 1457 56.6
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1486.1 1425 57.9
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1481.5 1447 56.9
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1477.6 1428 56.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1471.4 1393 57.9
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1469.1 1293 59.4
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1468.4 1425 56.7
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1466.4 1492 54.3
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1464.1 1408 56.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1464.1 1408 56.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1496 55.5
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1456.4 1288 59.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1455.3 1423 57.2
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1454.5 1502 54.4
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1453.7 1447 55.6
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1453.7 1387 56.3
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1453.3 1423 55.9
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1453.0 1466 55.9
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1452.2 1460 55.9
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1451.0 1417 55.5
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1450.6 1462 55.5
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1447.2 1421 56.9
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1446.4 1388 56.2
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1445.3 1379 57.5
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1443.7 1419 56.0
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1442.6 1363 56.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1436.4 1428 55.8
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1427.2 1464 53.5
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1420.6 1420 54.6
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1419.1 1445 54.0
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1417.1 1466 55.1
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1414.1 1460 53.3
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1411.0 1422 53.9
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1407.5 1440 56.2
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1388.2 1414 55.9
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1380.2 1294 56.4
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1376.7 1405 56.1
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1376.3 1469 53.5
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1372.1 1294 56.0
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1366.7 1297 55.5
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1362.8 1020 64.9
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1361.7 1327 54.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1359.0 1322 56.1
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1353.2 1375 54.0
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1350.9 1336 53.2
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1350.1 1446 51.0
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1343.9 1262 55.6
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1342.0 1253 55.4
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1339.7 1021 64.2
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1339.3 1231 56.1
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1338.9 1297 54.0
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1329.3 1398 50.9
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1325.8 1399 54.7
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1290.8 1300 51.9
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1279.2 1314 52.6
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1265.4 1255 52.5
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1264.2 1203 55.2
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1254.6 1415 50.2
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1232.6 1282 52.0
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1229.2 1238 54.8
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1228.8 1216 53.0
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1214.9 1280 53.8
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1179.9 1258 50.5
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1177.5 1447 46.2
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1139.8 1252 52.2
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1132.1 1134 56.7
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1107.0 851 62.4
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1100.9 859 63.0
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1089.3 1295 47.6
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1079.7 768 68.1
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 9.4e-302 1040.8 768 65.8
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 8.2e-298 1027.7 863 60.0
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 5.0e-295 1018.5 1028 51.5
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 5.2e-292 1008.4 1081 51.3
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.2e-286 989.2 1069 50.2
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 3.4e-251 872.8 837 56.4
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 9.2e-249 864.8 1011 47.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.3e-215 754.6 944 50.6
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.8e-212 744.2 481 73.2
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.5e-209 733.8 819 47.0
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.2e-185 653.7 790 52.0
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.6e-182 644.0 811 43.9
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 9.4e-169 599.0 490 62.2
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 8.0e-168 595.9 771 52.4
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.5e-166 591.7 771 52.3
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 5.2e-143 513.5 498 51.4
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 2.5e-137 494.6 324 70.1
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 7.3e-129 466.5 371 59.6
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 2.2e-117 428.3 491 51.7
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 3.0e-106 391.3 327 57.8
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.5e-97 361.7 235 74.0
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.2e-88 330.1 294 53.7
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.9e-81 308.9 206 71.4
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.7e-72 279.3 1027 25.9
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.5e-70 272.7 228 60.1
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 4.5e-70 271.2 512 39.3
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 2.2e-69 268.9 208 60.6
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 2.2e-69 268.9 608 40.5
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.8e-66 259.2 173 66.5
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 2.2e-64 252.3 728 27.7
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 6.5e-61 240.7 815 25.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 2.7e-54 218.8 145 66.9
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 4.7e-51 208.0 154 67.5
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.5e-46 191.8 174 62.1
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.6e-43 183.0 138 62.3
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.6e-41 175.6 115 70.4
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 1.3e-40 173.3 104 79.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 2.0e-38 166.0 448 36.8
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 4.0e-34 151.8 232 39.2
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 4.4e-33 148.3 156 54.5
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 5.8e-33 147.9 687 23.3
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 7.5e-33 147.5 139 51.8
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 7.5e-33 147.5 512 31.8
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 2.4e-31 142.5 137 49.6
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.8e-26 126.3 85 68.2
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 7.5e-25 120.9 105 55.2
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.3e-24 120.2 117 49.6
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 8.3e-24 117.5 111 54.1
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 9.2e-23 114.0 122 54.1
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 2.0e-22 112.8 72 63.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 4.6e-22 111.7 81 63.0
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 1.0e-21 110.5 121 51.2
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.3e-21 110.2 79 68.4
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.1e-20 107.1 138 44.9
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 3.3e-20 105.5 75 66.7
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 5.6e-20 104.8 119 49.6
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.1e-19 102.8 148 43.2
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 2.8e-19 102.4 179 45.8
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 1.1e-18 100.5 69 66.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 3.1e-18 99.0 119 44.5
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.2e-16 92.8 62 71.0
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 1.5e-12 80.1 155 41.9
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 5.6e-12 78.2 70 57.1
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 2.8e-11 75.9 113 38.9
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.6e-11 75.5 54 50.0
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 4.7e-11 75.1 66 57.6
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 4.0e-10 72.0 87 50.6
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 2.6e-09 69.3 36 80.6
Thhalv10002734m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 3.4e-09 68.9 44 75.0
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 5.8e-09 68.2 86 46.5
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 7.6e-09 67.8 96 44.8
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 9.9e-09 67.4 99 39.4
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 9.2e-07 60.8 355 20.6
Pp3c19_6990 Physcomitrium patens HOM05D002132 ORTHO05D002168 9.2e-07 60.8 358 20.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.2e-06 60.5 73 37.0
Ah.10g034090 Amaranthus hybridus HOM05D002132 ORTHO05D002168 4.6e-06 58.5 356 21.1
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 7.8e-06 57.8 149 39.6


User provided reference genes

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