Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015054m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 9.6e-59 229.9 116 100.0
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.0e-20 103.6 121 54.5
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 5.2e-20 101.3 129 51.2
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 6.8e-20 100.9 119 53.8
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 6.8e-20 100.9 119 53.8
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 8.8e-20 100.5 119 53.8
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 8.8e-20 100.5 119 53.8
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 1.2e-19 100.1 119 52.9
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.2e-19 100.1 119 52.9
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-19 99.8 119 52.1
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-19 99.8 119 52.1
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 2.0e-19 99.4 119 52.1
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 2.0e-19 99.4 119 53.8
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 2.0e-19 99.4 119 52.9
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 2.6e-19 99.0 119 52.1
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 3.4e-19 98.6 119 52.9
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 3.4e-19 98.6 119 52.1
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 3.4e-19 98.6 119 51.3
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 4.4e-19 98.2 119 51.3
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 4.4e-19 98.2 119 52.1
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 4.4e-19 98.2 119 52.1
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 5.7e-19 97.8 119 52.1
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 5.7e-19 97.8 119 52.9
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 7.5e-19 97.4 119 52.1
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 7.5e-19 97.4 119 51.3
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 51.3
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 52.1
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 51.3
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 52.1
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 51.3
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 51.3
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 9.7e-19 97.1 119 52.1
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.3e-18 96.7 119 52.1
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 1.3e-18 96.7 119 51.3
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 1.3e-18 96.7 119 51.3
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 1.3e-18 96.7 119 51.3
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 1.7e-18 96.3 119 51.3
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 1.7e-18 96.3 119 51.3
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 52.1
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 51.3
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 50.4
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 2.2e-18 95.9 119 50.4
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 50.4
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 50.4
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 2.8e-18 95.5 119 51.3
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 51.3
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 51.3
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 50.4
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 51.3
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 51.3
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 3.7e-18 95.1 119 51.3
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 4.8e-18 94.7 119 51.3
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 4.8e-18 94.7 119 51.3
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 4.8e-18 94.7 119 50.4
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 4.8e-18 94.7 119 51.3
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 6.3e-18 94.4 120 51.7
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 6.3e-18 94.4 119 50.4
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 6.3e-18 94.4 119 49.6
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 6.3e-18 94.4 119 49.6
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 6.3e-18 94.4 119 49.6
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 8.3e-18 94.0 120 50.8
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 8.3e-18 94.0 119 50.4
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 8.3e-18 94.0 118 51.7
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 8.3e-18 94.0 119 50.4
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 8.3e-18 94.0 119 50.4
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 1.1e-17 93.6 123 50.4
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 1.1e-17 93.6 120 51.7
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.1e-17 93.6 119 50.4
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 1.4e-17 93.2 119 50.4
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 1.4e-17 93.2 119 50.4
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.4e-17 93.2 119 50.4
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.4e-17 93.2 119 50.4
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 1.4e-17 93.2 119 49.6
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 1.8e-17 92.8 119 51.3
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.8e-17 92.8 119 50.4
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.8e-17 92.8 119 50.4
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 1.8e-17 92.8 119 50.4
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 1.8e-17 92.8 119 50.4
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 2.4e-17 92.4 119 50.4
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 3.1e-17 92.0 118 50.0
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 3.1e-17 92.0 119 50.4
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 3.1e-17 92.0 119 50.4
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 3.1e-17 92.0 119 49.6
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 4.1e-17 91.7 119 49.6
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 5.3e-17 91.3 119 49.6
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 5.3e-17 91.3 119 48.7
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 5.3e-17 91.3 119 48.7
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 7.0e-17 90.9 119 49.6
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 7.0e-17 90.9 119 49.6
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 9.1e-17 90.5 119 49.6
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 9.1e-17 90.5 120 49.2
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 9.1e-17 90.5 120 49.2
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 9.1e-17 90.5 119 47.1
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 9.1e-17 90.5 119 47.9
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 1.2e-16 90.1 119 48.7
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 1.6e-16 89.7 119 48.7
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 1.6e-16 89.7 119 48.7
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 1.6e-16 89.7 119 47.9
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 1.6e-16 89.7 119 48.7
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 2.0e-16 89.4 119 49.6
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 3.5e-16 88.6 119 45.4
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 7.7e-16 87.4 184 36.4
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 1.0e-15 87.0 119 45.4
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 2.2e-15 85.9 119 44.5
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.9e-15 85.5 119 47.1
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.9e-15 85.5 119 47.1
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.9e-15 85.5 119 47.1
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 3.8e-15 85.1 119 43.7
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 3.8e-15 85.1 119 47.1
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 6.5e-15 84.3 119 47.9
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 6.5e-15 84.3 119 47.1
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 3.2e-14 82.0 119 44.5
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 9.4e-14 80.5 119 44.5
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 1.6e-13 79.7 119 47.1
Nn6g35743 Nelumbo nucifera HOM05D001728 ORTHO05D004321 1.6e-13 79.7 108 50.0
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 2.1e-13 79.3 119 47.1
Ah.08g217390 Amaranthus hybridus HOM05D001728 ORTHO05D004321 6.1e-13 77.8 109 47.7
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 6.1e-13 77.8 117 46.2
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 3.0e-12 75.5 119 45.4
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 8.8e-12 73.9 119 39.5
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 8.8e-12 73.9 119 42.9
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 5.7e-11 71.2 122 41.0
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 1.7e-10 69.7 122 40.2
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 2.2e-10 69.3 117 41.0
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 2.2e-10 69.3 122 39.3
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 2.8e-10 68.9 122 40.2
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 4.1e-09 65.1 92 46.7
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 9.1e-09 63.9 90 46.7
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 3.5e-08 62.0 87 47.1
VMungo0251G1316 Vigna mungo HOM05D003205 ORTHO05D003746 1.9e-06 56.2 41 68.3
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 3.3e-06 55.5 39 71.8
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 5.5e-06 54.7 39 71.8
Duzib192G0575 Durio zibethinus HOM05D001728 ORTHO05D004321 7.2e-06 54.3 102 37.3
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 7.2e-06 54.3 56 57.1
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 7.2e-06 54.3 39 71.8
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 7.2e-06 54.3 39 71.8
PRCOL_00004928 Prasinoderma coloniale HOM05D001728 ORTHO05D004321 7.2e-06 54.3 119 31.9


User provided reference genes

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