Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 4.2e-96 354.8 186 100.0
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 3.0e-78 295.4 186 84.9
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 3.0e-78 295.4 186 84.9
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 2.5e-77 292.4 187 85.6
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 7.4e-77 290.8 185 83.8
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 7.4e-77 290.8 187 84.5
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 9.6e-77 290.4 186 83.3
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 1.6e-76 289.7 186 82.8
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 2.1e-76 289.3 187 84.5
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 3.7e-76 288.5 187 82.9
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 1.8e-75 286.2 185 82.7
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 1.8e-75 286.2 186 82.8
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 1.8e-75 286.2 186 82.8
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 5.3e-75 284.6 185 82.7
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 1.1e-72 276.9 193 79.3
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 4.2e-72 275.0 186 81.2
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 4.2e-72 275.0 185 80.5
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 1.6e-68 263.1 185 78.4
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 1.6e-68 263.1 185 78.4
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 1.4e-67 260.0 185 77.8
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 1.4e-67 260.0 185 77.8
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 1.2e-55 220.3 183 69.9
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 3.8e-49 198.7 200 59.5
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.4e-48 196.8 200 59.5
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 4.7e-47 191.8 176 68.2
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 2.0e-37 159.8 193 50.8
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 5.7e-37 158.3 185 54.1
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.3e-36 157.1 191 51.3
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 1.7e-36 156.8 186 51.1
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 2.2e-36 156.4 194 51.0
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.7e-36 155.6 188 51.1
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 3.7e-36 155.6 188 51.1
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 4.8e-36 155.2 193 50.3
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 1.1e-35 154.1 185 55.1
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 1.1e-35 154.1 192 49.0
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 4.1e-35 152.1 191 48.2
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.6e-34 150.2 193 49.2
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 2.0e-34 149.8 209 46.9
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.7e-34 147.9 193 48.7
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 8.5e-33 144.4 191 47.1
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 2.5e-32 142.9 192 47.4
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 7.2e-32 141.4 192 48.4
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 7.2e-32 141.4 193 46.6
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 2.7e-31 139.4 194 45.4
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 3.6e-31 139.0 186 46.8
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 3.6e-31 139.0 191 47.6
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 3.6e-31 139.0 192 49.5
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.8e-30 136.7 204 42.6
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 1.8e-30 136.7 186 46.8
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 1.8e-30 136.7 188 51.1
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.8e-30 136.7 190 45.3
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.8e-30 136.7 190 45.3
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 2.3e-30 136.3 186 46.8
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 2.3e-30 136.3 193 47.7
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 2.3e-30 136.3 211 44.1
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 4.0e-30 135.6 196 45.4
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 3.4e-29 132.5 188 45.7
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 4.4e-29 132.1 192 44.3
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 1.7e-28 130.2 185 45.4
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 2.2e-28 129.8 187 45.5
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 2.2e-28 129.8 200 42.5
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.8e-28 129.4 201 43.8
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 3.7e-28 129.0 200 45.0
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 1.8e-27 126.7 178 46.6
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 2.4e-27 126.3 204 41.7
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 3.1e-27 125.9 193 44.6
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 9.1e-27 124.4 186 45.2
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.6e-26 123.6 186 43.0
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 4.5e-26 122.1 196 43.4
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 5.9e-26 121.7 160 46.2
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 3.8e-25 119.0 185 43.8
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 5.0e-25 118.6 188 45.7
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.6e-23 113.6 188 44.7
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 2.1e-23 113.2 189 39.7
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.7e-23 112.1 141 49.6
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 1.8e-22 110.2 188 42.6
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 4.0e-22 109.0 200 41.0
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 2.6e-21 106.3 186 39.2
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 2.8e-20 102.8 149 45.6
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 3.7e-20 102.4 150 42.7
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 4.9e-20 102.1 148 45.9
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 8.3e-20 101.3 186 38.7
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.1e-19 100.9 192 37.5
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.2e-18 97.4 210 36.7
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 1.6e-18 97.1 181 40.9
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 2.7e-18 96.3 185 36.8
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 5.9e-18 95.1 144 42.4
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 7.8e-18 94.7 192 39.1
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 7.8e-18 94.7 211 34.6
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 7.8e-18 94.7 195 36.4
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 5.0e-17 92.0 199 35.7
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 7.3e-16 88.2 182 40.1
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 3.6e-15 85.9 166 38.0
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 3.6e-15 85.9 123 44.7
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 8.0e-15 84.7 170 37.1
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 8.0e-15 84.7 134 41.8
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 1.0e-14 84.3 176 36.4
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 1.4e-14 84.0 189 37.6
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.8e-14 83.6 202 36.1
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 1.8e-14 83.6 174 37.4
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 2.3e-14 83.2 206 35.0
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 2.3e-14 83.2 188 35.6
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.1e-14 82.8 206 35.4
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 4.0e-14 82.4 181 37.6
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 8.9e-14 81.3 208 35.1
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.2e-13 80.9 141 39.7
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 2.0e-13 80.1 207 33.8
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 4.4e-13 79.0 182 35.7
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 1.7e-12 77.0 181 35.4
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 4.9e-12 75.5 200 36.0
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 6.4e-12 75.1 153 37.3
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 4.1e-11 72.4 119 40.3
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.0e-09 67.8 144 33.3
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 1.3e-09 67.4 186 33.3
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 3.9e-09 65.9 99 42.4
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 1.5e-08 63.9 213 29.6
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 9.5e-08 61.2 92 41.3
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 1.6e-07 60.5 102 42.2
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 8.0e-07 58.2 97 40.2
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 8.0e-07 58.2 97 40.2
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.4e-06 57.4 98 40.8
Oeu003277.1 Olea europaea HOM05D006285 ORTHO05D007249 1.4e-06 57.4 190 32.1
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 1.8e-06 57.0 86 44.2
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 3.1e-06 56.2 94 40.4
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 3.1e-06 56.2 83 44.6
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 5.2e-06 55.5 155 32.3
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 5.2e-06 55.5 82 41.5
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 8.9e-06 54.7 99 38.4


User provided reference genes

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