Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.3e-125 451.1 230 100.0
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 5.9e-108 394.4 247 85.8
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.4e-104 383.3 233 85.8
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 4.8e-102 374.8 206 91.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 4.1e-101 371.7 191 94.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 4.1e-101 371.7 188 96.3
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-100 369.8 188 96.3
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 4.5e-100 368.2 218 83.5
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 1.0e-99 367.1 229 83.0
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.0e-99 367.1 188 95.2
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 5.5e-98 361.3 235 79.6
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 9.4e-98 360.5 217 81.6
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.6e-97 359.8 230 79.1
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.7e-97 359.0 230 79.6
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 6.1e-97 357.8 203 85.7
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-96 357.1 232 78.4
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.0e-96 357.1 232 78.4
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.8e-96 356.3 232 78.4
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 3.0e-96 355.5 233 78.5
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.1e-96 354.8 201 85.1
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 6.7e-96 354.4 232 78.0
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 9.7e-95 350.5 230 79.1
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 7.0e-93 344.4 213 78.4
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 7.7e-92 340.9 224 73.2
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.0e-91 340.5 224 73.2
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.0e-91 340.5 224 73.2
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.3e-91 340.1 237 73.4
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 5.0e-91 338.2 213 78.4
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 5.0e-91 338.2 224 74.6
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 6.5e-91 337.8 231 72.3
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 6.5e-91 337.8 231 74.0
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 8.5e-91 337.4 226 73.5
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.9e-90 336.3 230 72.6
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 4.2e-90 335.1 229 73.8
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 4.2e-90 335.1 230 72.2
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.6e-89 333.2 186 91.4
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 4.7e-89 331.6 216 74.5
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 4.7e-89 331.6 213 74.2
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 4.7e-89 331.6 227 72.7
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 6.1e-89 331.3 237 69.2
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 8.0e-89 330.9 230 71.7
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 8.0e-89 330.9 221 71.9
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 8.0e-89 330.9 237 71.3
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.0e-88 330.5 230 72.2
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.4e-88 330.1 226 72.1
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.3e-88 329.3 195 88.2
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 3.0e-88 328.9 233 73.0
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 3.9e-88 328.6 239 69.0
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 3.9e-88 328.6 229 69.4
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 5.2e-88 328.2 235 71.1
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 5.2e-88 328.2 223 73.1
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 6.7e-88 327.8 230 72.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 8.8e-88 327.4 226 73.5
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 1.5e-87 326.6 226 71.7
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 4.4e-87 325.1 234 70.1
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 5.7e-87 324.7 238 70.6
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 7.4e-87 324.3 226 69.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 9.7e-87 323.9 235 70.6
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.7e-86 323.2 227 70.9
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 3.7e-86 322.0 221 70.6
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 3.7e-86 322.0 221 70.1
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 8.2e-86 320.9 219 70.3
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 8.2e-86 320.9 232 70.3
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 8.2e-86 320.9 234 69.7
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.4e-85 320.1 238 68.5
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.8e-85 319.7 224 70.5
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.8e-85 319.7 217 71.9
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.1e-85 318.5 233 69.5
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 7.0e-85 317.8 222 69.8
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 7.0e-85 317.8 221 68.8
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 7.0e-85 317.8 216 70.8
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 7.0e-85 317.8 223 69.1
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 7.0e-85 317.8 232 66.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 1.2e-84 317.0 239 66.1
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.0e-84 316.2 242 67.4
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.0e-84 316.2 236 68.2
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.5e-84 315.5 230 67.8
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 4.5e-84 315.1 237 67.9
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.0e-83 313.9 218 71.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.0e-83 313.9 233 67.4
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.3e-83 313.5 238 66.0
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.2e-83 312.8 189 77.2
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 3.8e-83 312.0 190 76.3
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 8.5e-83 310.8 225 69.3
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.5e-82 310.1 237 67.1
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 229 66.4
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.5e-82 310.1 228 69.7
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 1.5e-82 310.1 213 70.0
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 1.9e-82 309.7 265 61.5
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.5e-82 309.3 219 69.9
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.2e-82 308.5 242 65.3
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 5.5e-82 308.1 217 67.3
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 9.4e-82 307.4 243 63.8
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.2e-81 307.0 233 67.4
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.6e-81 306.6 240 65.8
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 4.7e-81 305.1 233 66.5
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 6.1e-81 304.7 232 64.2
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.0e-80 303.9 232 63.8
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 6.7e-80 301.2 255 61.6
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 3.3e-79 298.9 234 66.2
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 7.5e-79 297.7 201 71.1
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-78 297.0 258 59.7
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.2e-78 296.2 235 64.7
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.4e-77 293.5 199 69.3
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 7.0e-77 291.2 230 63.5
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.1e-74 283.9 221 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.9e-74 283.1 204 66.2
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.6e-73 280.0 188 67.6
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 4.7e-73 278.5 213 67.6
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 3.0e-72 275.8 240 58.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 4.0e-72 275.4 185 73.5
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 1.7e-70 270.0 239 60.3
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 4.8e-70 268.5 289 52.6
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.1e-69 267.3 163 75.5
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 9.1e-69 264.2 166 71.7
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 2.0e-68 263.1 182 63.2
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 5.9e-68 261.5 189 68.8
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 2.0e-63 246.5 217 53.5
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 5.0e-59 231.9 183 59.0
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 5.0e-59 231.9 357 40.9
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 4.9e-54 215.3 133 72.2
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 7.0e-53 211.5 183 55.2
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 9.2e-45 184.5 129 62.0
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 1.6e-41 173.7 104 75.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 3.4e-39 166.0 104 73.1
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 7.5e-39 164.9 120 69.2
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 4.0e-24 115.9 87 64.4
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 3.4e-23 112.8 167 40.7
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.1e-18 97.8 182 25.8
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.5e-18 97.4 63 69.8
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.5e-18 96.7 213 30.5
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 4.3e-18 95.9 216 25.9
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 7.3e-18 95.1 230 27.4
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 9.6e-18 94.7 181 29.8
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 9.6e-18 94.7 180 24.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.3e-17 94.4 181 29.8
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.3e-17 94.4 181 29.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 3.6e-17 92.8 191 26.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 4.8e-17 92.4 234 26.5
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 8.1e-17 91.7 163 28.2
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.8e-16 90.5 180 28.9
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.2e-15 87.8 216 25.0
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.5e-15 87.4 185 25.9
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 2.6e-15 86.7 183 25.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 7.6e-15 85.1 206 26.7
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 9.9e-15 84.7 163 28.8
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 1.7e-14 84.0 180 26.1
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 1.7e-14 84.0 166 26.5
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.7e-14 84.0 218 27.5
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.7e-14 84.0 221 27.1
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 2.2e-14 83.6 180 26.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.2e-14 83.6 166 26.5
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 2.9e-14 83.2 180 26.1
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 2.9e-14 83.2 190 27.4
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 8.4e-14 81.6 190 26.8
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 8.4e-14 81.6 185 24.9
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.1e-13 81.3 231 25.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.1e-13 81.3 180 27.2
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.9e-13 80.5 229 27.9
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 4.2e-13 79.3 188 26.6
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 4.2e-13 79.3 188 26.6
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 4.2e-13 79.3 180 26.1
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 5.4e-13 79.0 180 26.1
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 7.1e-13 78.6 228 25.4
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 7.1e-13 78.6 184 25.5
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 7.1e-13 78.6 243 24.7
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.6e-12 77.4 221 25.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 2.1e-12 77.0 229 26.2
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 2.7e-12 76.6 216 24.5
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 3.5e-12 76.3 228 25.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.5e-12 76.3 216 24.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 7.9e-12 75.1 183 25.1
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.3e-11 73.6 233 25.8
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.3e-11 73.6 164 27.4
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 1.5e-10 70.9 187 23.5
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.3e-10 69.7 41 75.6
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.1e-09 67.0 239 23.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.8e-09 66.6 131 27.5
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 3.7e-09 66.2 227 25.6
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.1e-08 64.7 40 72.5
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.4e-08 64.3 167 22.2
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.0e-07 60.5 232 24.1


User provided reference genes

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