Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 5.8e-100 368.2 198 100.0
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 7.9e-89 331.3 199 91.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.9e-87 326.6 199 91.5
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.8e-86 322.8 199 92.0
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.8e-86 322.8 199 92.0
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 4.8e-86 322.0 199 89.9
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 4.8e-86 322.0 199 87.9
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.8e-85 320.1 199 88.9
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 2.6e-84 316.2 191 91.1
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.9e-82 310.1 189 90.5
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.9e-82 310.1 191 89.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 5.5e-74 282.0 202 77.2
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-73 280.0 202 76.7
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.7e-73 279.6 198 79.3
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 2.3e-72 276.6 198 77.3
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.1e-71 274.2 198 78.8
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.5e-71 273.9 195 79.0
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.5e-71 273.9 198 76.8
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.5e-71 273.9 195 76.9
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 2.0e-71 273.5 198 77.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.6e-71 273.1 194 78.9
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 5.7e-71 271.9 198 76.3
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 5.7e-71 271.9 201 76.1
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 9.7e-71 271.2 193 78.2
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.3e-70 270.8 195 76.4
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.2e-70 270.0 193 77.2
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 2.8e-70 269.6 202 75.7
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 2.8e-70 269.6 195 76.4
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 4.8e-70 268.9 199 73.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 8.2e-70 268.1 199 75.4
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.8e-69 266.9 195 75.9
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.8e-69 266.9 190 75.8
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 3.1e-69 266.2 199 75.4
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 4.1e-69 265.8 198 75.3
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 5.3e-69 265.4 198 74.2
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-68 264.2 194 75.8
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 1.2e-68 264.2 198 75.3
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.5e-68 263.8 199 72.9
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.5e-68 263.8 214 71.0
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 2.0e-68 263.5 197 75.6
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.0e-68 263.5 196 75.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.6e-68 263.1 198 73.2
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 2.6e-68 263.1 193 77.2
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 2.6e-68 263.1 198 75.3
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.5e-68 262.3 192 77.6
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 5.9e-68 261.9 192 75.5
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.7e-67 260.4 189 78.3
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.7e-67 260.4 202 75.2
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 3.8e-67 259.2 198 75.8
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 3.8e-67 259.2 193 76.7
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 8.5e-67 258.1 194 76.8
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.4e-66 257.3 200 73.5
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.4e-66 257.3 193 76.2
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.9e-66 256.9 198 74.2
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.2e-66 255.8 195 73.3
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 4.2e-66 255.8 195 74.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 5.5e-66 255.4 193 75.6
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-65 254.2 198 66.2
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.1e-65 253.4 198 73.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.1e-65 253.4 195 75.4
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-64 250.4 195 73.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 3.9e-64 249.2 138 91.3
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.3e-63 246.1 198 72.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.3e-63 246.1 179 76.0
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.7e-62 242.7 202 71.3
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.2e-60 237.7 209 65.1
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.6e-60 236.5 182 74.2
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.2e-59 233.4 221 57.0
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-59 233.0 186 72.6
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.8e-59 232.6 192 69.8
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 5.5e-58 228.8 196 67.3
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.2e-57 227.6 180 73.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.6e-57 227.3 199 68.3
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.6e-57 227.3 195 69.7
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 8.0e-57 224.9 193 60.1
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.2e-56 222.2 224 60.3
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 5.2e-56 222.2 199 68.3
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 8.8e-56 221.5 168 74.4
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 1.5e-55 220.7 168 75.0
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.3e-54 217.6 171 73.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.8e-53 213.8 197 61.9
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 4.1e-53 212.6 172 70.9
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-53 211.8 172 72.1
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 2.0e-52 210.3 163 72.4
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.0e-51 208.0 169 70.4
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-50 204.5 178 60.1
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 5.5e-50 202.2 155 75.5
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 7.2e-50 201.8 162 70.4
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.2e-49 201.1 190 56.3
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 6.1e-49 198.7 137 72.3
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 8.0e-49 198.4 186 62.4
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.8e-48 197.2 153 75.2
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.2e-47 194.5 150 75.3
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.4e-47 193.0 151 70.9
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 7.5e-47 191.8 134 70.9
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 2.2e-46 190.3 175 64.6
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 6.3e-46 188.7 192 59.9
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.4e-45 187.6 197 58.9
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 7.0e-45 185.3 176 64.8
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.6e-44 184.1 140 63.6
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.0e-44 183.7 146 65.8
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.0e-43 179.1 182 57.7
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 6.5e-43 178.7 141 63.8
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 5.5e-42 175.6 137 63.5
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-41 174.5 172 55.2
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-41 173.3 172 59.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 4.7e-41 172.6 178 57.9
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 8.0e-41 171.8 195 55.9
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 8.0e-41 171.8 191 56.0
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-40 171.0 164 61.6
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.8e-40 170.6 173 63.6
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.4e-39 166.4 219 46.1
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 5.7e-39 165.6 180 50.6
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 8.3e-38 161.8 138 61.6
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 4.1e-37 159.5 194 54.6
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 5.4e-37 159.1 130 73.8
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 7.0e-37 158.7 166 62.7
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 4.5e-36 156.0 181 56.4
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.3e-35 153.7 200 46.0
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.9e-35 153.3 212 46.7
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 2.9e-35 153.3 161 59.6
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-34 150.6 136 56.6
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.5e-34 148.3 164 53.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-33 147.1 156 53.8
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.0e-32 144.8 165 58.8
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-32 144.1 160 53.1
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 2.3e-32 143.7 154 53.2
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-31 140.6 165 57.6
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-30 136.7 127 69.3
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.9e-30 136.0 136 65.4
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-29 134.8 139 53.2
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.6e-28 131.0 138 51.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 7.8e-28 128.6 110 60.9
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.7e-27 127.5 176 43.8
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-27 126.3 93 67.7
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 8.6e-27 125.2 86 68.6
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-26 124.0 190 44.2
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.5e-26 123.6 110 60.0
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-26 122.5 115 59.1
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-25 121.3 86 66.3
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.0e-24 118.2 96 60.4
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.0e-24 118.2 132 59.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.4e-23 113.2 103 57.3
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.8e-23 112.5 90 60.0
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 6.4e-22 109.0 98 57.1
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-21 107.8 86 60.5
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.9e-21 107.5 72 69.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.6e-20 102.8 94 53.2
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 7.8e-20 102.1 177 47.5
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.3e-19 100.5 63 69.8
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.3e-18 96.7 100 50.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.9e-16 88.6 163 39.3
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.9e-16 88.6 207 37.7
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.6e-15 87.0 71 60.6
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-12 78.2 143 37.8
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.0e-12 75.9 101 45.5
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.8e-12 75.5 46 76.1
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.3e-11 74.7 54 63.0
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.6e-11 72.0 176 32.4
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 1.5e-10 71.2 74 47.3
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.9e-10 70.9 116 37.1
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 3.3e-10 70.1 54 59.3
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 9.5e-10 68.6 64 56.2
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.5e-10 68.6 64 56.2
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-08 64.7 80 47.5
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 5.2e-08 62.8 86 43.0
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.0e-07 60.8 100 38.0
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 2.6e-07 60.5 39 71.8
ECA247G4014 Erigeron canadensis HOM05D001221 ORTHO05D009285 5.8e-07 59.3 89 41.6
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.8e-07 59.3 107 39.3
Lsat_1_v5_gn_9_35920 Lactuca sativa HOM05D001221 ORTHO05D009285 9.9e-07 58.5 101 40.6
CSS0000018 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D009285 1.7e-06 57.8 100 40.0
CSS0034566 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D009285 1.7e-06 57.8 100 40.0
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 1.7e-06 57.8 97 38.1
Actinidia13771 Actinidia chinensis HOM05D001221 ORTHO05D009285 2.2e-06 57.4 103 38.8
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 2.2e-06 57.4 34 64.7
Pp3c17_20390 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.2e-06 57.4 110 32.7
ClCG08G009430 Citrullus lanatus HOM05D003419 ORTHO05D004113 2.9e-06 57.0 100 40.0
Manes.09G103400 Manihot esculenta HOM05D001221 ORTHO05D009285 2.9e-06 57.0 85 43.5
Rhsim05G0207300 Rhododendron simsii HOM05D001221 ORTHO05D009285 2.9e-06 57.0 89 43.8
Sopen12g004960 Solanum pennellii HOM05D003419 ORTHO05D004113 2.9e-06 57.0 94 35.1
Pp3c2_37860 Physcomitrium patens HOM05D003419 ORTHO05D004113 3.8e-06 56.6 98 34.7
Nitab4.5_0003567g0110 Nicotiana tabacum HOM05D001221 ORTHO05D009285 8.4e-06 55.5 117 34.2


User provided reference genes

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