Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 8.9e-165 583.6 301 100.0
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 7.9e-121 437.6 251 89.6
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 3.9e-120 435.3 251 89.6
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 3.9e-120 435.3 251 90.8
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.1e-119 433.7 251 89.2
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 1.9e-119 433.0 251 90.0
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.9e-119 433.0 252 89.3
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 1.9e-119 433.0 251 90.0
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.3e-118 430.3 251 88.4
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 2.2e-118 429.5 251 88.0
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 4.8e-118 428.3 251 88.0
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 5.3e-117 424.9 253 87.7
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 5.1e-112 408.3 251 84.9
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 3.4e-108 395.6 251 81.7
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-106 390.6 281 76.2
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 1.1e-98 364.0 255 74.5
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 7.2e-98 361.3 252 75.0
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 3.6e-97 359.0 251 74.5
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 8.0e-97 357.8 227 78.9
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.0e-96 357.5 229 78.6
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.1e-95 354.0 254 70.9
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.6e-95 352.8 254 70.9
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 3.3e-95 352.4 254 70.5
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 7.4e-95 351.3 233 76.0
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 9.7e-95 350.9 228 77.2
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 3.7e-94 349.0 249 72.7
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 3.7e-94 349.0 249 72.7
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 3.7e-94 349.0 224 78.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 3.7e-94 349.0 249 73.1
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 8.2e-94 347.8 249 72.7
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.1e-93 347.4 235 75.3
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.1e-93 347.4 247 70.9
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.1e-93 347.4 254 70.1
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.4e-93 347.1 254 71.7
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.4e-93 347.1 227 76.2
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.1e-93 345.9 249 72.7
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 4.1e-93 345.5 248 71.4
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 5.3e-93 345.1 233 75.1
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.3e-93 345.1 232 73.7
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 7.0e-93 344.7 229 76.9
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 9.1e-93 344.4 227 75.8
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 1.2e-92 344.0 225 74.7
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.2e-92 344.0 228 75.9
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 1.6e-92 343.6 234 74.8
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 2.6e-92 342.8 248 71.0
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 3.5e-92 342.4 235 74.0
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 4.5e-92 342.0 232 75.0
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 4.5e-92 342.0 251 72.5
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 5.9e-92 341.7 252 70.6
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 5.9e-92 341.7 224 77.2
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.7e-91 340.1 267 68.5
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.9e-91 339.3 250 70.8
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 3.8e-91 339.0 249 70.7
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 3.8e-91 339.0 202 86.6
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 3.8e-91 339.0 229 73.8
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 6.5e-91 338.2 251 69.7
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 6.5e-91 338.2 267 68.2
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 8.5e-91 337.8 229 75.5
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 8.5e-91 337.8 254 70.5
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 8.5e-91 337.8 228 74.1
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.1e-90 337.4 248 69.8
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.5e-90 337.0 223 76.2
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.9e-90 336.7 231 73.2
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.9e-90 336.7 251 69.3
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 2.5e-90 336.3 244 70.1
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 4.2e-90 335.5 228 73.7
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 4.2e-90 335.5 235 72.8
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 5.5e-90 335.1 233 72.5
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 7.2e-90 334.7 253 70.0
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 7.2e-90 334.7 227 73.6
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 7.2e-90 334.7 235 73.2
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.2e-89 334.0 244 70.5
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 3.6e-89 332.4 232 72.0
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.0e-88 330.9 232 71.6
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.8e-88 330.1 250 70.8
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 1.8e-88 330.1 250 70.0
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 6.7e-88 328.2 251 67.7
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 1.2e-87 327.4 233 72.1
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 1.5e-87 327.0 244 69.3
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.6e-87 326.2 223 73.5
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 2.6e-87 326.2 244 68.4
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 3.3e-87 325.9 236 71.2
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 4.4e-87 325.5 237 69.2
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 5.7e-87 325.1 230 70.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.2e-86 323.2 233 70.4
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 8.2e-86 321.2 249 66.3
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 9.1e-85 317.8 215 74.0
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.7e-83 313.5 279 62.4
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 2.2e-83 313.2 214 72.0
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.9e-83 312.8 278 63.7
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.8e-83 312.4 209 74.6
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 5.0e-83 312.0 223 72.2
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 8.5e-83 311.2 244 68.4
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 5.5e-82 308.5 244 63.9
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 9.4e-82 307.8 242 64.9
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 8.0e-81 304.7 225 65.8
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.0e-80 304.3 233 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 6.8e-80 301.6 228 64.5
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 8.8e-80 301.2 218 66.5
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.5e-79 300.4 226 65.9
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.5e-79 300.4 242 64.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.3e-75 286.6 166 81.9
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.5e-74 283.9 251 66.1
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.9e-74 283.5 224 62.5
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 4.2e-74 282.3 233 62.2
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.2e-73 280.8 201 69.2
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 5.7e-71 271.9 164 78.7
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.2e-68 264.2 272 52.9
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.3e-67 260.8 180 72.2
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 1.5e-63 247.3 163 76.1
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.3e-62 244.2 243 53.5
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 3.7e-62 242.7 255 56.5
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 3.2e-61 239.6 212 57.1
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.0e-60 236.9 171 69.0
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 3.0e-59 233.0 116 97.4
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 6.6e-59 231.9 159 72.3
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.9e-58 230.3 213 56.3
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.6e-55 219.9 226 54.0
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.4e-53 213.4 214 57.0
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 4.7e-49 199.1 115 82.6
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.7e-43 180.6 101 80.2
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.1e-40 169.9 265 40.8
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 5.1e-35 152.5 126 62.7
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.5e-34 150.2 124 64.5
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 1.2e-33 147.9 139 60.4
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 3.1e-32 143.3 68 98.5
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.1e-26 124.8 79 74.7
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 4.5e-23 112.8 57 87.7
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.4e-21 107.8 117 50.4
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 3.3e-18 96.7 54 77.8
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 3.1e-16 90.1 72 69.4
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 6.4e-14 82.4 70 61.4
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 4.2e-13 79.7 57 68.4
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-11 73.6 60 68.3
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.0e-11 73.6 58 62.1
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 2.5e-10 70.5 46 78.3
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 1.1e-08 65.1 58 56.9
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 2.0e-07 60.8 90 40.0


User provided reference genes

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