Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 2.7e-233 811.6 400 100.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 5.5e-178 627.9 399 82.0
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.5e-154 550.1 402 72.1
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.8e-150 535.8 445 64.9
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.8e-149 533.1 400 70.2
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.9e-147 525.8 398 68.1
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.6e-137 493.4 402 67.7
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 6.8e-136 488.0 403 68.0
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 8.8e-136 487.6 401 67.1
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 5.7e-135 485.0 403 67.5
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 8.4e-102 374.8 342 65.5
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.6e-74 281.6 443 40.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 3.7e-65 253.1 464 37.5
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.5e-61 240.4 391 38.6
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.3e-61 238.4 417 37.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 2.1e-60 237.3 415 39.5
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 2.1e-60 237.3 415 39.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.9e-60 235.3 451 38.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 2.3e-59 233.8 416 39.2
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 5.7e-58 229.2 415 38.8
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-57 228.0 415 39.5
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.9e-54 216.9 430 35.8
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.3e-51 207.2 411 34.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.8e-49 200.3 422 36.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.4e-35 154.8 545 26.4
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.3e-35 154.1 407 27.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.7e-31 140.6 141 45.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 5.9e-31 139.4 145 42.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-30 137.1 157 42.0
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.5e-29 134.8 151 43.0
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.9e-29 134.4 590 24.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.5e-29 134.0 151 41.7
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 7.2e-29 132.5 167 40.7
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 7.2e-29 132.5 497 26.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.6e-28 131.3 511 24.3
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.7e-28 130.6 148 41.9
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.7e-28 129.8 511 24.1
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 6.1e-28 129.4 142 43.7
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.0e-27 126.7 146 43.2
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 8.8e-27 125.6 141 42.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 8.8e-27 125.6 141 42.6
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.5e-26 124.8 127 44.9
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.5e-26 122.5 82 59.8
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.5e-26 122.5 141 41.8
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 9.8e-26 122.1 151 39.7
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 9.8e-26 122.1 151 39.7
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.3e-25 121.7 170 35.3
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.3e-25 121.7 144 40.3
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.7e-25 120.2 140 40.7
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.7e-25 120.2 508 25.8
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.8e-25 119.8 142 39.4
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 8.3e-25 119.0 375 26.1
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.1e-24 118.6 155 40.0
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.1e-24 118.6 138 41.3
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.4e-24 118.2 149 38.3
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.4e-24 118.2 162 36.4
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.4e-24 117.5 153 37.9
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.1e-24 116.7 212 31.1
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 7.0e-24 115.9 140 41.4
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 9.1e-24 115.5 207 33.3
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.2e-23 115.2 148 37.2
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.2e-23 115.2 160 37.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.0e-23 114.4 157 37.6
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.0e-23 114.4 139 40.3
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.0e-23 114.4 138 37.7
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 7.7e-23 112.5 156 36.5
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.0e-22 112.1 148 37.8
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.0e-22 112.1 162 35.2
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.0e-22 112.1 123 46.3
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.7e-22 111.3 164 38.4
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.9e-22 110.5 148 38.5
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.9e-22 110.5 158 39.9
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 5.0e-22 109.8 146 39.0
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 8.5e-22 109.0 130 36.2
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 8.5e-22 109.0 147 37.4
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 8.5e-22 109.0 149 34.9
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.5e-21 108.2 145 35.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.9e-21 107.8 173 32.9
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.5e-21 107.5 118 48.3
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 3.2e-21 107.1 439 26.2
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 5.5e-21 106.3 257 30.0
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.5e-21 106.3 180 31.1
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.2e-21 105.9 125 40.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 9.5e-21 105.5 143 38.5
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 9.5e-21 105.5 109 47.7
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.2e-20 105.1 153 37.3
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-20 105.1 125 40.0
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 2.1e-20 104.4 145 36.6
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.6e-20 103.6 360 26.7
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.6e-20 103.6 136 41.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.6e-20 103.6 136 41.2
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.6e-20 103.6 120 43.3
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 3.6e-20 103.6 209 28.2
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.7e-20 103.2 117 43.6
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.7e-20 103.2 106 46.2
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.7e-20 103.2 106 46.2
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 4.7e-20 103.2 396 24.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 8.0e-20 102.4 142 36.6
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.3e-19 100.9 113 43.4
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.3e-19 100.9 118 38.1
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.3e-19 100.9 119 44.5
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 8.8e-19 99.0 131 36.6
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 8.8e-19 99.0 144 36.8
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.2e-18 98.6 136 37.5
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-18 98.6 110 43.6
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.2e-18 98.6 110 43.6
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.6e-18 97.4 121 39.7
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.6e-18 97.4 137 35.0
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 4.4e-18 96.7 117 43.6
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 5.7e-18 96.3 136 37.5
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 5.7e-18 96.3 102 43.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 9.8e-18 95.5 141 37.6
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 1.3e-17 95.1 105 42.9
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.2e-17 94.4 111 40.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.3e-17 92.8 117 41.0
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 8.3e-17 92.4 124 36.3
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.1e-16 92.0 103 41.7
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.8e-16 91.3 145 36.6
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 3.1e-16 90.5 106 40.6
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 5.4e-16 89.7 183 31.7
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 4.5e-15 86.7 123 35.8
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 5.9e-15 86.3 119 36.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.8e-15 85.9 91 42.9
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.9e-14 84.0 122 35.2
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 6.6e-14 82.8 175 30.3
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.9e-13 81.3 136 33.1
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.0e-11 75.5 84 36.9
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 5.2e-11 73.2 110 37.3
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 8.9e-11 72.4 100 35.0
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.2e-10 72.0 100 35.0
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 4.4e-10 70.1 112 38.4
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.4e-08 65.1 109 36.7
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.4e-08 64.3 58 46.6
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.4e-08 64.3 58 46.6
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 4.1e-08 63.5 84 33.3
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 5.4e-08 63.2 87 34.5
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 9.2e-08 62.4 93 31.2
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 9.2e-08 62.4 118 32.2
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.2e-07 62.0 84 33.3
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.6e-07 61.6 90 33.3
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 2.0e-07 61.2 138 29.0
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.6e-07 60.1 102 30.4
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 1.0e-06 58.9 86 31.4
Dinv42202 Davidia involucrata HOM05D002655 ORTHO05D002558 3.9e-06 57.0 63 41.3
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 3.9e-06 57.0 66 39.4
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 5.0e-06 56.6 109 36.7
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 6.6e-06 56.2 68 41.2
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 6.6e-06 56.2 44 52.3


User provided reference genes

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