Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.3e-193 679.1 436 100.0
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.9e-171 606.3 436 91.3
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.5e-168 595.9 436 89.7
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.3e-160 568.9 437 84.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.1e-159 566.2 437 84.7
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.8e-159 565.8 437 88.8
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.4e-156 554.7 437 80.8
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-152 543.9 432 86.8
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.9e-152 543.1 439 84.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.5e-149 531.9 436 83.5
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.5e-149 531.9 436 83.5
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.3e-145 520.4 437 75.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 4.2e-131 472.2 442 71.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.4e-123 444.5 441 60.5
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.2e-122 444.1 444 62.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.8e-121 440.3 442 67.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 6.7e-121 438.3 430 70.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.5e-120 437.2 439 60.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 8.2e-119 431.4 438 61.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.1e-118 427.9 427 60.9
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.5e-117 427.2 441 63.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.0e-117 426.8 441 62.4
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 5.9e-117 425.2 438 61.6
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 7.7e-117 424.9 440 62.5
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.0e-116 424.5 437 61.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.0e-116 424.5 441 60.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-116 424.5 441 60.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.3e-116 424.1 441 59.6
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.0e-116 422.2 437 61.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 6.5e-116 421.8 437 61.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 6.5e-116 421.8 432 64.8
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.9e-115 420.2 438 65.8
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.5e-115 419.9 437 60.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.2e-115 419.1 438 61.2
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-114 417.5 442 60.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 3.6e-114 416.0 441 61.5
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.7e-114 415.6 441 60.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.9e-114 414.8 434 61.8
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.4e-113 414.1 441 61.2
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.0e-113 412.9 441 60.8
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 5.1e-113 412.1 444 60.6
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.1e-112 411.0 441 60.1
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-112 410.6 444 60.4
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 3.3e-112 409.5 347 69.2
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.3e-112 409.5 442 59.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 3.3e-112 409.5 437 60.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 4.4e-112 409.1 444 65.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 5.7e-112 408.7 440 61.1
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 9.7e-112 407.9 361 68.1
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.7e-111 407.1 436 60.8
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.7e-111 407.1 436 60.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.2e-111 406.8 444 60.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.3e-111 405.2 444 59.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 6.3e-111 405.2 440 60.5
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.1e-110 404.4 438 61.2
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.8e-110 403.7 440 59.3
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.4e-110 403.3 437 58.4
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 3.1e-110 402.9 446 58.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.1e-110 402.5 442 59.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.1e-110 402.5 436 59.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.0e-110 401.7 434 60.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 9.1e-110 401.4 444 58.3
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.0e-109 400.2 436 60.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.0e-109 400.2 361 67.9
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.0e-109 400.2 361 67.9
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 7.7e-109 398.3 438 57.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.7e-109 398.3 442 58.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.0e-108 397.9 442 58.4
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.3e-108 397.5 439 63.1
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 2.9e-108 396.4 439 59.2
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.8e-108 396.0 436 60.1
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.1e-107 394.4 435 63.0
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.5e-107 393.3 441 57.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.5e-107 392.1 439 62.6
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 7.2e-107 391.7 439 62.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.2e-107 391.7 437 59.3
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 7.2e-107 391.7 435 62.8
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 2.1e-106 390.2 435 60.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.7e-106 389.8 439 62.0
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.0e-105 387.9 436 61.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-105 387.1 439 61.7
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.0e-105 386.3 440 59.5
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 5.2e-105 385.6 435 59.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.7e-105 385.2 440 57.5
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-104 384.4 438 55.9
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.1e-104 384.4 439 59.9
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.5e-104 384.0 440 57.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.6e-104 383.3 428 63.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.6e-104 383.3 470 55.5
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 3.3e-104 382.9 445 56.4
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 9.7e-104 381.3 439 55.4
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.7e-103 380.6 352 62.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.7e-103 379.4 429 60.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 6.3e-103 378.6 449 59.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.4e-102 376.7 369 63.1
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.7e-100 370.5 435 60.7
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 8.5e-100 368.2 443 55.3
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.1e-99 367.9 435 55.9
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-99 367.9 346 66.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.5e-99 367.5 362 60.2
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.5e-99 367.5 436 56.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.5e-99 366.7 444 53.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-99 366.7 444 55.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-98 364.0 439 54.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 4.0e-97 359.4 439 56.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 4.0e-97 359.4 450 54.4
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 5.2e-97 359.0 447 64.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-95 354.0 438 55.5
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.7e-95 352.8 437 59.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.4e-94 350.9 325 64.3
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.4e-94 350.9 439 53.3
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.4e-94 350.1 346 66.8
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.0e-93 347.1 438 53.0
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.7e-92 344.0 442 57.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.5e-91 340.1 446 54.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 8.0e-90 335.1 398 56.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.6e-88 330.1 361 57.3
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.3e-87 327.8 439 52.4
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 7.7e-85 318.5 340 63.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 5.0e-84 315.8 355 57.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 4.2e-83 312.8 444 51.8
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.4e-80 303.1 365 52.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.4e-78 297.0 435 49.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 5.0e-76 289.3 356 57.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 8.6e-76 288.5 413 49.9
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 4.6e-69 266.2 384 49.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.0e-69 265.8 378 49.7
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 6.6e-68 262.3 439 53.5
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 6.6e-68 262.3 223 70.9
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 3.6e-66 256.5 276 63.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 3.6e-66 256.5 276 63.8
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.2e-65 252.7 437 45.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.5e-64 248.8 318 53.1
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 8.3e-63 245.4 445 42.9
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-61 241.1 374 44.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.1e-60 236.1 217 65.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.6e-59 232.6 255 60.8
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 5.2e-49 199.5 194 63.9
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 3.5e-45 186.8 148 81.8
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 9.6e-43 178.7 264 47.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.9e-41 172.6 254 45.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.6e-40 169.1 358 38.5
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.7e-39 167.9 398 37.2
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.4e-39 166.0 248 46.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.6e-37 161.4 369 37.4
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.0e-32 144.4 397 33.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.3e-27 126.7 349 39.0
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.4e-27 125.9 173 48.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 7.4e-27 125.9 109 64.2
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.6e-24 117.5 257 31.9
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 6.5e-23 112.8 184 43.5
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 3.8e-15 87.0 121 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.3e-11 73.9 247 26.3
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 2.0e-08 64.7 118 40.7


User provided reference genes

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