Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 0.0e+00 1201.4 728 100.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 0.0e+00 1131.3 728 92.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 0.0e+00 1130.5 729 94.0
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1120.9 731 93.2
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 0.0e+00 1120.1 731 94.3
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1114.4 730 93.6
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 0.0e+00 1108.2 729 90.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1098.2 733 92.5
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1096.6 731 91.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1094.3 731 90.0
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1089.7 767 85.5
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1088.6 732 91.0
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 0.0e+00 1085.9 729 91.4
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1077.0 757 85.1
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.5e-311 1071.6 758 78.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-308 1062.4 732 90.7
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.7e-308 1061.6 731 90.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 8.4e-286 986.9 732 81.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.6e-284 982.6 733 82.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-278 963.0 766 80.8
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.0e-243 847.0 746 70.2
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 8.6e-238 827.4 745 69.7
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 4.7e-236 821.6 751 69.0
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.3e-235 819.3 749 68.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.7e-233 813.1 749 69.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.7e-233 813.1 749 69.3
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 7.0e-232 807.7 737 70.0
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-232 807.7 746 72.1
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-231 806.2 746 72.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 4.6e-231 805.1 747 72.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-230 803.5 747 71.9
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.3e-230 802.7 758 68.7
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.9e-229 799.7 631 66.4
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.5e-229 799.3 640 65.0
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.5e-229 799.3 747 67.3
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 3.3e-229 798.9 794 55.3
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 3.3e-229 798.9 765 66.9
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 5.6e-229 798.1 748 68.9
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.4e-227 793.5 772 66.5
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.8e-227 793.1 750 68.0
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.8e-227 791.2 750 66.9
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.7e-225 785.4 754 67.2
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 6.4e-225 784.6 744 68.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 6.0e-223 778.1 770 65.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.3e-222 776.9 743 67.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.3e-222 776.2 744 67.1
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 6.6e-222 774.6 757 65.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.3e-221 772.3 759 67.3
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 9.5e-221 770.8 756 66.1
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 9.5e-221 770.8 738 66.8
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.6e-220 770.0 758 65.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.6e-220 770.0 741 66.8
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 6.2e-220 768.1 742 66.6
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.1e-219 767.3 744 66.8
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.3e-219 766.1 744 68.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.1e-219 765.8 739 67.7
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.0e-218 763.1 784 64.2
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 7.5e-218 761.1 740 66.5
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.3e-217 760.4 750 69.2
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-217 760.4 751 66.0
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.7e-217 760.0 759 66.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.9e-217 759.2 751 66.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 6.4e-217 758.1 750 69.2
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 8.3e-217 757.7 751 68.6
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.4e-216 756.9 766 63.8
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.4e-216 756.9 749 68.8
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.9e-216 756.5 750 66.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.9e-216 756.5 766 63.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.4e-216 756.1 740 66.2
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.4e-216 756.1 766 65.5
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.2e-216 755.7 751 66.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 3.2e-216 755.7 749 68.8
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.1e-216 754.6 751 65.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 7.1e-216 754.6 753 65.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.6e-215 753.4 749 65.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.7e-215 752.7 740 66.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 4.6e-215 751.9 762 65.6
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 4.6e-215 751.9 757 64.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 6.0e-215 751.5 774 64.2
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 6.6e-214 748.0 823 60.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 8.6e-214 747.7 740 65.3
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-213 746.5 775 64.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 8.1e-212 741.1 752 66.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.3e-209 733.8 747 66.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.3e-209 733.8 756 64.6
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.1e-208 730.7 843 59.3
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.4e-208 730.3 752 65.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.9e-208 729.9 784 53.6
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-205 720.7 755 64.9
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 2.8e-204 716.1 761 64.7
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.7e-204 715.3 834 60.7
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.1e-203 714.1 741 65.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.8e-203 713.4 789 53.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 2.4e-203 713.0 637 62.3
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.4e-200 703.7 744 64.8
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.1e-199 699.9 770 61.0
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 7.8e-199 698.0 682 68.0
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 3.0e-198 696.0 738 65.6
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.9e-198 695.7 788 60.8
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.8e-196 689.5 743 62.4
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 7.6e-186 654.8 784 58.0
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.5e-183 646.0 747 62.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 5.1e-182 642.1 805 58.8
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 2.7e-175 619.8 744 58.9
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.1e-171 605.9 772 47.8
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.3e-169 600.9 563 62.0
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.9e-159 565.1 1241 41.7
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.7e-156 556.2 719 57.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.1e-155 553.1 773 55.6
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.0e-153 548.1 768 53.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.4e-150 537.7 544 66.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 4.8e-148 529.3 748 56.3
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.4e-147 526.9 759 55.6
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.0e-142 511.5 751 55.3
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.5e-136 491.1 752 54.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.8e-134 482.3 451 57.9
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.6e-120 436.0 438 55.3
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.1e-115 421.8 441 54.0
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 5.2e-110 402.9 603 44.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-102 378.6 380 55.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-93 348.6 483 48.0
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.7e-92 344.7 315 80.0
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.1e-89 333.2 336 76.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 6.6e-89 332.8 388 68.0
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.5e-88 330.9 380 50.5
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 9.0e-86 322.4 304 80.9
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.8e-78 298.1 477 44.0
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.3e-78 296.6 332 52.4
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.9e-75 288.1 198 66.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.5e-72 277.7 744 32.3
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 2.6e-69 267.7 841 39.7
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-56 223.4 126 85.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 8.2e-55 219.5 692 30.3
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-41 174.9 181 54.1
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-39 168.3 90 88.9
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-39 167.9 98 83.7
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 8.0e-34 149.8 94 73.4
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 7.4e-32 143.3 93 82.8
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.8e-31 141.4 234 40.2
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-30 139.0 225 39.6
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-30 137.1 76 86.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-30 136.7 84 79.8
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-29 135.2 225 39.1
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 7.7e-29 133.3 166 50.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-27 129.4 83 73.5
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-27 127.5 105 62.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.0e-26 123.2 66 83.3
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-24 119.4 136 58.1
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.0e-24 118.6 146 49.3
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.8e-23 114.0 70 77.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.0e-22 110.2 141 51.1
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-22 109.8 61 82.0
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-21 109.4 60 86.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 82.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 7.7e-21 106.7 117 57.3
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.1e-19 102.8 155 90.3
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-18 98.6 103 54.4
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.3e-17 95.1 115 51.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.4e-16 90.9 154 85.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-15 89.4 89 53.9
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 2.2e-15 88.6 182 35.2
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-12 78.2 60 70.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.9e-11 75.5 105 48.6
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 6.1e-10 70.5 34 97.1
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.4e-09 69.3 190 28.4
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.6e-08 65.1 41 73.2
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.7e-08 63.9 34 85.3
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.2e-07 62.0 109 39.4
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-07 62.0 33 84.8
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.2e-07 62.0 34 82.4
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.8e-06 58.9 34 79.4
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 3.1e-06 58.2 30 90.0
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 3.1e-06 58.2 30 90.0
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 3.1e-06 58.2 34 76.5
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 57.0 25 96.0


User provided reference genes

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