Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012343m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.3e-165 585.5 289 100.0
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.8e-98 363.2 347 62.2
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 1.7e-35 154.1 225 44.0
BcaC04g21106 Brassica carinata HOM05D000896 ORTHO05D000594 1.7e-32 144.1 296 38.9
BolC9t56400H Brassica oleracea HOM05D000896 ORTHO05D000594 1.7e-32 144.1 296 38.9
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 1.6e-30 137.5 195 41.5
AT2G27410 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.4e-26 123.6 187 42.8
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 2.4e-26 123.6 197 41.1
Carub.0004s1350 Capsella rubella HOM05D000896 ORTHO05D000594 3.2e-26 123.2 199 40.7
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.2e-25 121.3 196 39.3
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.3e-24 117.1 188 41.5
AT2G32645 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.9e-24 116.3 121 49.6
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 1.5e-23 114.4 167 41.9
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-22 111.3 167 41.3
C09p35640 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-22 111.3 296 35.5
BolC4t27593H Brassica oleracea HOM05D000896 ORTHO05D000594 2.3e-21 107.1 137 44.5
BcaC02g07988 Brassica carinata HOM05D000896 ORTHO05D000594 2.0e-20 104.0 167 39.5
BcaC02g07983 Brassica carinata HOM05D000896 ORTHO05D000594 3.4e-20 103.2 154 41.6
C04p61050 Brassica napus HOM05D000896 ORTHO05D000594 3.4e-20 103.2 154 41.6
BolC4t27592H Brassica oleracea HOM05D000896 ORTHO05D000594 3.4e-20 103.2 154 41.6
BcaB06g28546 Brassica carinata HOM05D000896 ORTHO05D000594 7.6e-20 102.1 154 42.9
A09p28140 Brassica napus HOM05D000896 ORTHO05D000594 6.4e-19 99.0 91 59.3
C04p61100 Brassica napus HOM05D000896 ORTHO05D000594 8.3e-19 98.6 126 46.0
Sp4g13910 Schrenkiella parvula HOM05D000896 ORTHO05D000594 7.1e-18 95.5 147 40.1
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.0e-16 91.7 196 34.7
C04p61060 Brassica napus HOM05D000896 ORTHO05D000594 2.5e-15 87.0 104 47.1
BcaC02g07987 Brassica carinata HOM05D000896 ORTHO05D000594 3.3e-15 86.7 113 45.1
C04p61020 Brassica napus HOM05D000896 ORTHO05D000594 5.6e-15 85.9 104 47.1
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 7.3e-15 85.5 306 27.8
THA.LOC104826207 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.6e-14 84.3 124 40.3
AT2G31420 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.8e-14 83.6 134 38.1
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 3.6e-14 83.2 201 32.8
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 1.4e-13 81.3 203 32.5
Thhalv10024065m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.4e-13 81.3 76 59.2
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 8.9e-13 78.6 124 38.7
Thhalv10029136m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.2e-12 78.2 120 39.2
AT2G31460 Arabidopsis thaliana HOM05D012749 ORTHO05D000594 2.0e-12 77.4 143 35.7
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 2.6e-12 77.0 156 34.0
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 2.6e-12 77.0 156 34.0
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 3.4e-12 76.6 156 34.0
Thhalv10009984m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 7.6e-12 75.5 209 33.5
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 1.3e-11 74.7 264 28.0
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.7e-11 74.3 201 32.3
AT1G05920 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.9e-11 72.8 145 34.5
CANSAT11G2686 Cannabis sativa HOM05D000896 ORTHO05D000594 1.1e-10 71.6 125 36.0
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.4e-10 71.2 195 30.8
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.4e-10 71.2 195 30.8
BraA09t38376Z Brassica rapa HOM05D000896 ORTHO05D000594 1.4e-10 71.2 74 55.4
CANSAT80G2647 Cannabis sativa HOM05D000896 ORTHO05D000594 1.4e-10 71.2 136 33.8
TPR.G9525 Trifolium pratense HOM05D000896 ORTHO05D000594 1.4e-10 71.2 201 29.4
AL1G15880 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-10 70.9 150 34.0
Thhalv10029259m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.9e-10 70.9 214 29.4
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 2.4e-10 70.5 149 34.2
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.2e-10 69.7 181 30.4
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.2e-10 69.7 182 30.8
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.2e-10 69.7 139 33.8
CANSAT80G0323 Cannabis sativa HOM05D000896 ORTHO05D000594 7.1e-10 68.9 154 31.8
CANSAT80G2420 Cannabis sativa HOM05D000896 ORTHO05D000594 7.1e-10 68.9 154 31.8
CARHR005050 Cardamine hirsuta HOM05D000896 ORTHO05D000594 9.3e-10 68.6 147 32.7
QL03p040404 Quercus lobata HOM05D000896 ORTHO05D000594 9.3e-10 68.6 160 34.4
SpUn1102_0010 Schrenkiella parvula HOM05D000896 ORTHO05D000594 9.3e-10 68.6 124 33.9
AL4G28420 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.2e-09 68.2 123 39.0
QL03p040822 Quercus lobata HOM05D000896 ORTHO05D000594 1.2e-09 68.2 136 36.0
RcHm_v2.0_Chr1g0380951 Rosa chinensis HOM05D000896 ORTHO05D000594 1.2e-09 68.2 124 33.1
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.6e-09 67.8 139 33.8
AT5G24050 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.6e-09 67.8 181 30.9
Medtr7g098870 Medicago truncatula HOM05D000896 ORTHO05D000594 2.1e-09 67.4 108 33.3
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.5e-09 66.6 130 36.9
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.5e-09 66.6 115 39.1
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.6e-09 66.2 188 31.4
FAN13G2118 Fragaria x ananassa HOM05D000896 ORTHO05D000594 4.6e-09 66.2 155 31.6
FAN13G2868 Fragaria x ananassa HOM05D000896 ORTHO05D013425 4.6e-09 66.2 155 31.6
BcaB04g18266 Brassica carinata HOM05D000896 ORTHO05D000594 6.0e-09 65.9 202 30.2
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 6.0e-09 65.9 186 28.5
CARHR125380 Cardamine hirsuta HOM05D000896 ORTHO05D000594 6.0e-09 65.9 215 30.7
FvH4_5g16210 Fragaria vesca HOM05D000896 ORTHO05D000594 6.0e-09 65.9 133 32.3
FAN18G2330 Fragaria x ananassa HOM05D000896 ORTHO05D013425 6.0e-09 65.9 133 32.3
ECA234G4860 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.0e-08 65.1 159 32.1
FAN01G0387 Fragaria x ananassa HOM05D016935 ORTHO05D000594 1.0e-08 65.1 157 29.9
Cpa.g.sc3.72 Carica papaya HOM05D000896 ORTHO05D000594 1.3e-08 64.7 122 34.4
CANSAT80G0091 Cannabis sativa HOM05D000896 ORTHO05D000594 2.3e-08 63.9 154 29.9
FAN08G1294 Fragaria x ananassa HOM05D000896 ORTHO05D000594 2.3e-08 63.9 155 31.0
Sp6g07490 Schrenkiella parvula HOM05D000896 ORTHO05D000594 2.3e-08 63.9 124 32.3
CANSAT80G2725 Cannabis sativa HOM05D000896 ORTHO05D000594 3.0e-08 63.5 123 31.7
ClCG08G015080 Citrullus lanatus HOM05D000896 ORTHO05D000594 3.0e-08 63.5 134 29.1
FvH4_7g31730 Fragaria vesca HOM05D016935 ORTHO05D000594 3.0e-08 63.5 157 29.9
MD02G1271600 Malus domestica HOM05D000896 ORTHO05D000594 3.0e-08 63.5 114 33.3
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 3.9e-08 63.2 134 30.6
Ciclev10030162m.g Citrus clementina HOM05D000896 ORTHO05D000594 3.9e-08 63.2 122 34.4
FAN06G3056 Fragaria x ananassa HOM05D016935 ORTHO05D000594 3.9e-08 63.2 159 28.9
Thecc.03G196900 Theobroma cacao HOM05D000896 ORTHO05D000594 3.9e-08 63.2 122 33.6
AL5G29460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.1e-08 62.8 187 31.0
QL03p026378 Quercus lobata HOM05D000896 ORTHO05D000594 6.6e-08 62.4 130 33.8
FAN10G0677 Fragaria x ananassa HOM05D016935 ORTHO05D000594 8.7e-08 62.0 122 30.3
FAN10G2619 Fragaria x ananassa HOM05D016935 ORTHO05D000594 8.7e-08 62.0 122 30.3
QL03p040416 Quercus lobata HOM05D000896 ORTHO05D000594 8.7e-08 62.0 136 33.8
SalBow4G2196 Salvia bowleyana HOM05D000896 ORTHO05D000594 8.7e-08 62.0 124 34.7
BolC1t01330H Brassica oleracea HOM05D000896 ORTHO05D000594 1.1e-07 61.6 144 30.6
Gohir.A12G043480 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-07 61.6 122 36.1
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-07 61.6 122 36.1
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-07 61.6 122 36.1
Gohir.D12G042950 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-07 61.6 122 36.1
Gohir.D12G043450 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-07 61.6 122 36.1
AL4G27140 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.5e-07 61.2 204 30.4
Hma1.2p1_0128F.1_g059930 Hydrangea macrophylla HOM05D000896 ORTHO05D000594 1.9e-07 60.8 124 31.5
AT2G31720 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.5e-07 60.5 194 29.4
BcaC02g07220 Brassica carinata HOM05D000896 ORTHO05D000594 2.5e-07 60.5 119 33.6
BolC4t28489H Brassica oleracea HOM05D000896 ORTHO05D000594 2.5e-07 60.5 119 33.6
ECA232G1083 Erigeron canadensis HOM05D000896 ORTHO05D000594 2.5e-07 60.5 128 32.8
AL4G26970 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.3e-07 60.1 205 30.7
C04p69900 Brassica napus HOM05D000896 ORTHO05D000594 3.3e-07 60.1 119 33.6
ECA234G4629 Erigeron canadensis HOM05D000896 ORTHO05D000594 3.3e-07 60.1 243 28.4
FAN03G1203 Fragaria x ananassa HOM05D016935 ORTHO05D000594 3.3e-07 60.1 232 25.9
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 3.3e-07 60.1 122 35.2
AT2G32905 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.3e-07 59.7 120 37.5
HanXRQChr08g0217011 Helianthus annuus HOM05D000896 ORTHO05D000594 4.3e-07 59.7 123 33.3
BraA04t18691Z Brassica rapa HOM05D000896 ORTHO05D000594 5.6e-07 59.3 144 31.2
CsaV3_5G028430 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.6e-07 59.3 122 32.0
Sed0016322 Sechium edule HOM05D000896 ORTHO05D000594 5.6e-07 59.3 108 32.4
AL4G41370 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.3e-07 58.9 156 31.4
Dinv21551 Davidia involucrata HOM05D000896 ORTHO05D000594 7.3e-07 58.9 128 32.8
Sed0019902 Sechium edule HOM05D000896 ORTHO05D000594 7.3e-07 58.9 164 28.0
Sopen11g001210 Solanum pennellii HOM05D000896 ORTHO05D000594 7.3e-07 58.9 123 31.7
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.3e-06 58.2 230 28.7
AT5G38490 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.3e-06 58.2 245 28.2
Carub.0007s3741 Capsella rubella HOM05D000896 ORTHO05D000594 1.3e-06 58.2 312 26.3
CARHR101530 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.3e-06 58.2 140 34.3
Ciclev10030095m.g Citrus clementina HOM05D000896 ORTHO05D000594 1.3e-06 58.2 123 29.3
Ciclev10030266m.g Citrus clementina HOM05D000896 ORTHO05D000594 1.3e-06 58.2 123 29.3
CsaV3_5G027950 Cucumis sativus L. HOM05D000896 ORTHO05D000594 1.3e-06 58.2 123 31.7
HanXRQChr03g0076911 Helianthus annuus HOM05D000896 ORTHO05D000594 1.3e-06 58.2 123 32.5
QL11p027543 Quercus lobata HOM05D000896 ORTHO05D000594 1.3e-06 58.2 163 31.3
Migut.G01064 Erythranthe guttata HOM05D000896 ORTHO05D000594 1.6e-06 57.8 125 31.2
Migut.K01123 Erythranthe guttata HOM05D000896 ORTHO05D000594 1.6e-06 57.8 125 31.2
RcHm_v2.0_Chr1g0380921 Rosa chinensis HOM05D000896 ORTHO05D000594 1.6e-06 57.8 162 29.6
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 1.6e-06 57.8 164 28.0
Cfa016216 Carpinus fangiana HOM05D000896 ORTHO05D000594 2.1e-06 57.4 212 28.3
COL.COLO4_20383 Corchorus olitorius HOM05D000896 ORTHO05D000594 2.1e-06 57.4 160 30.0
Migut.G01061 Erythranthe guttata HOM05D000896 ORTHO05D000594 2.1e-06 57.4 125 31.2
Migut.G01089 Erythranthe guttata HOM05D000896 ORTHO05D000594 2.1e-06 57.4 125 31.2
Carub.0004s1274 Capsella rubella HOM05D000896 ORTHO05D000594 2.8e-06 57.0 152 28.9
CARHR125400 Cardamine hirsuta HOM05D000896 ORTHO05D000594 2.8e-06 57.0 223 28.7
CsaV3_5G027980 Cucumis sativus L. HOM05D000896 ORTHO05D000594 2.8e-06 57.0 123 31.7
CsaV3_5G028220 Cucumis sativus L. HOM05D000896 ORTHO05D000594 2.8e-06 57.0 123 31.7
Peaxi162Scf00765g00215 Petunia axillaris HOM05D000896 ORTHO05D000594 2.8e-06 57.0 122 27.9
Psat0s5759g0040 Pisum sativum HOM05D000896 ORTHO05D000594 2.8e-06 57.0 118 33.1
Psat4g122800 Pisum sativum HOM05D000896 ORTHO05D000594 2.8e-06 57.0 118 33.1
TPR.G1144 Trifolium pratense HOM05D000896 ORTHO05D000594 2.8e-06 57.0 126 35.7
BcaB02g10422 Brassica carinata HOM05D000896 ORTHO05D000594 3.6e-06 56.6 130 30.8
C04p18170 Brassica napus HOM05D000896 ORTHO05D000594 3.6e-06 56.6 214 26.2
BolC4t23373H Brassica oleracea HOM05D000896 ORTHO05D000594 3.6e-06 56.6 214 26.2
ECA233G4381 Erigeron canadensis HOM05D000896 ORTHO05D000594 3.6e-06 56.6 116 32.8
Migut.L00847 Erythranthe guttata HOM05D000896 ORTHO05D000594 3.6e-06 56.6 123 33.3
THA.LOC104825400 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.6e-06 56.6 115 33.0
AL4G26670 Arabidopsis lyrata HOM05D012749 ORTHO05D000594 4.8e-06 56.2 124 30.6
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.8e-06 56.2 208 28.8
arahy.Tifrunner.gnm1.ann1.TNG32Q Arachis hypogaea HOM05D011529 ORTHO05D000594 4.8e-06 56.2 126 33.3
Ciclev10030359m.g Citrus clementina HOM05D000896 ORTHO05D000594 4.8e-06 56.2 122 28.7
Dinv21550 Davidia involucrata HOM05D000896 ORTHO05D000594 4.8e-06 56.2 128 32.0
ECA234G1615 Erigeron canadensis HOM05D000896 ORTHO05D000594 4.8e-06 56.2 122 35.2
FvH4_7g31340 Fragaria vesca HOM05D000896 ORTHO05D000594 4.8e-06 56.2 124 30.6
FAN01G0184 Fragaria x ananassa HOM05D000896 ORTHO05D000594 4.8e-06 56.2 124 30.6
Nn1g05626 Nelumbo nucifera HOM05D000896 ORTHO05D000594 4.8e-06 56.2 150 32.7
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 6.2e-06 55.8 180 31.7
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 6.2e-06 55.8 180 31.7
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 6.2e-06 55.8 180 31.7
CAN.G1140.8 Capsicum annuum HOM05D000896 ORTHO05D000594 6.2e-06 55.8 124 30.6
Gorai.008G045100 Gossypium raimondii HOM05D000896 ORTHO05D000594 6.2e-06 55.8 111 36.9
A09p67360 Brassica napus HOM05D000896 ORTHO05D000594 8.1e-06 55.5 176 30.1
C04p17890 Brassica napus HOM05D000896 ORTHO05D000594 8.1e-06 55.5 149 28.2
BolC4t23337H Brassica oleracea HOM05D000896 ORTHO05D000594 8.1e-06 55.5 149 28.2
BraA09t42067Z Brassica rapa HOM05D000896 ORTHO05D000594 8.1e-06 55.5 176 30.1
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 8.1e-06 55.5 121 30.6
Ciclev10029971m.g Citrus clementina HOM05D000896 ORTHO05D000594 8.1e-06 55.5 116 29.3
Migut.M01845 Erythranthe guttata HOM05D000896 ORTHO05D000594 8.1e-06 55.5 123 33.3
Migut.M01852 Erythranthe guttata HOM05D000896 ORTHO05D000594 8.1e-06 55.5 123 33.3
FAN03G0356 Fragaria x ananassa HOM05D000896 ORTHO05D000594 8.1e-06 55.5 124 30.6
FAN06G0415 Fragaria x ananassa HOM05D000896 ORTHO05D000594 8.1e-06 55.5 122 31.1
FAN06G5054 Fragaria x ananassa HOM05D000896 ORTHO05D000594 8.1e-06 55.5 122 31.1
Glyma.02G291400 Glycine max HOM05D000896 ORTHO05D000594 8.1e-06 55.5 119 29.4
HanXRQChr16g0528541 Helianthus annuus HOM05D000896 ORTHO05D000594 8.1e-06 55.5 120 33.3
Prupe.2G278500 Prunus persica HOM05D000896 ORTHO05D000594 8.1e-06 55.5 123 32.5


User provided reference genes

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