Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.6e-175 619.4 331 100.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.2e-167 593.2 331 94.9
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 8.0e-167 590.5 330 94.8
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-166 589.7 329 94.8
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 5.2e-166 587.8 331 94.3
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 6.8e-166 587.4 331 94.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.2e-165 586.6 331 94.6
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 2.0e-165 585.9 328 94.5
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 2.6e-165 585.5 330 94.2
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-164 582.4 339 92.9
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 2.4e-163 578.9 330 93.9
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 2.4e-163 578.9 330 93.9
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 9.2e-163 577.0 330 93.6
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 2.9e-161 572.0 330 93.0
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.9e-155 552.7 307 95.1
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 3.2e-155 552.0 364 83.5
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 3.0e-153 545.4 306 93.5
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 8.9e-150 533.9 325 85.2
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 4.4e-141 505.0 293 91.1
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 4.3e-136 488.4 326 76.4
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 2.0e-133 479.6 334 74.3
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.6e-133 479.2 328 75.9
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 7.6e-133 477.6 329 75.1
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.3e-132 476.9 329 74.8
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 3.8e-132 475.3 337 74.5
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.4e-131 472.6 333 74.2
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.2e-130 470.3 327 73.1
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.6e-130 469.9 333 74.8
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.1e-130 469.5 329 74.5
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 2.7e-130 469.2 333 73.3
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.7e-130 469.2 330 74.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 7.8e-130 467.6 329 74.2
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.0e-129 467.2 317 75.7
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.3e-129 466.8 329 72.9
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.7e-129 466.5 327 75.2
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 5.1e-129 464.9 327 73.7
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 6.6e-129 464.5 329 73.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 1.1e-128 463.8 331 73.1
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.1e-128 463.8 331 74.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 1.9e-128 463.0 332 74.1
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 3.3e-128 462.2 328 73.8
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 3.3e-128 462.2 334 74.0
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 4.3e-128 461.8 328 72.9
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 5.6e-128 461.5 328 72.6
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 9.6e-128 460.7 328 71.6
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 1.6e-127 459.9 331 72.2
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 2.8e-127 459.1 327 74.0
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 6.2e-127 458.0 330 70.9
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 6.2e-127 458.0 331 72.8
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 9.0e-126 454.1 330 71.8
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.2e-125 453.8 334 70.7
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.5e-125 453.4 331 72.5
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.0e-125 453.0 337 71.2
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 4.4e-125 451.8 334 71.6
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 5.8e-125 451.4 338 71.0
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.6e-125 451.1 329 72.6
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.9e-123 446.4 331 70.4
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 9.3e-123 444.1 327 72.8
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.6e-122 443.4 340 71.2
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 4.6e-122 441.8 300 74.7
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 7.9e-122 441.0 311 73.6
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 7.9e-122 441.0 329 70.8
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.0e-121 440.7 333 68.2
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.0e-121 440.7 339 69.6
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.3e-121 439.5 339 68.4
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 5.1e-121 438.3 329 70.2
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 1.9e-120 436.4 334 68.6
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.3e-120 435.6 332 69.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.3e-120 435.6 300 74.0
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 4.3e-120 435.3 300 74.0
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 9.6e-120 434.1 298 76.2
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.8e-118 429.9 365 64.1
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.9e-118 427.9 329 68.4
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 9.0e-118 427.6 332 66.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-117 427.2 329 68.4
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 3.8e-116 422.2 337 66.8
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.1e-115 420.6 272 78.7
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.4e-115 420.2 362 64.6
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.4e-115 419.5 331 67.4
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-114 417.2 323 70.0
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.5e-112 410.2 331 67.7
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.9e-112 409.8 352 65.1
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 3.3e-112 409.1 370 62.4
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 3.3e-112 409.1 336 65.5
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 4.3e-112 408.7 331 67.4
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 4.3e-112 408.7 315 70.2
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 7.4e-112 407.9 338 66.9
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 9.6e-112 407.5 310 67.7
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 8.1e-111 404.4 359 63.8
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.4e-110 403.7 272 75.4
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 4.0e-110 402.1 330 64.8
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 2.0e-109 399.8 337 63.5
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.4e-109 399.1 324 66.0
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 4.9e-108 395.2 402 57.7
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.5e-104 383.6 300 69.0
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 4.3e-104 382.1 265 75.1
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 5.7e-104 381.7 338 59.5
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.3e-103 380.6 281 70.1
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.9e-100 369.4 301 63.5
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 2.5e-99 366.3 328 60.4
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.1e-96 357.5 241 77.2
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 2.2e-95 353.2 305 63.6
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.1e-94 349.0 329 60.2
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.0e-93 346.7 274 67.5
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.6e-93 346.3 196 93.4
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.4e-91 340.5 248 69.0
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.6e-90 337.0 300 57.3
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.6e-90 335.9 214 80.4
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 3.3e-88 329.3 296 56.8
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 3.1e-86 322.8 197 88.3
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 5.9e-85 318.5 234 74.4
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.7e-84 317.0 208 78.8
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.1e-83 314.3 206 78.2
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 8.8e-81 304.7 233 71.2
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 3.7e-79 299.3 271 57.9
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.3e-70 268.9 207 67.6
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.2e-63 246.9 167 76.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.5e-60 235.0 306 42.5
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 9.8e-48 194.9 143 74.1
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.3e-47 194.5 149 70.5
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 4.3e-43 179.5 297 40.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.5e-29 133.3 103 65.0
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 7.3e-27 125.6 90 71.1
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.0e-24 117.5 247 37.2
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 4.4e-24 116.3 119 53.8
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 7.6e-24 115.5 99 60.6
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.8e-23 113.2 95 64.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 3.2e-22 110.2 79 68.4
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 4.6e-21 106.3 91 64.8
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.0e-20 103.6 118 54.2
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.6e-16 90.5 62 79.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 61 72.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 62 72.6
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.9e-15 86.3 62 74.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 4.2e-14 83.2 106 46.2
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-12 77.0 58 72.4
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.6e-12 75.9 55 74.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 3.3e-11 73.6 73 49.3
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 4.3e-11 73.2 68 51.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.3e-10 71.6 53 60.4
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 4.5e-08 63.2 45 64.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 5.8e-08 62.8 42 69.0
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 3.8e-07 60.1 35 77.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 3.8e-07 60.1 35 77.1
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 4.9e-07 59.7 124 36.3
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 6.4e-07 59.3 37 78.4


User provided reference genes

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