Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011004m.g Eutrema salsugineum HOM05D011101 ORTHO05D013180 4.6e-87 324.7 185 100.0
CARHR156120 Cardamine hirsuta HOM05D011101 ORTHO05D013180 3.4e-74 282.0 186 88.7
BcaB02g10698 Brassica carinata HOM05D011101 ORTHO05D013180 4.2e-72 275.0 185 85.9
A06p27180 Brassica napus HOM05D011101 ORTHO05D013180 3.9e-70 268.5 184 86.4
BraA06t25660Z Brassica rapa HOM05D011101 ORTHO05D013180 1.1e-69 266.9 184 85.9
AL5G26710 Arabidopsis lyrata HOM05D011101 ORTHO05D013180 1.9e-69 266.2 183 85.8
Sp5g14400 Schrenkiella parvula HOM05D011101 ORTHO05D013180 7.4e-69 264.2 187 84.0
A06p20170 Brassica napus HOM05D011101 ORTHO05D013180 2.8e-68 262.3 185 82.2
BcaB01g00919 Brassica carinata HOM05D011101 ORTHO05D013180 4.8e-68 261.5 185 77.8
AT3G47480 Arabidopsis thaliana HOM05D011101 ORTHO05D013180 6.2e-68 261.2 185 83.8
BcaC01g01820 Brassica carinata HOM05D011101 ORTHO05D013180 8.1e-68 260.8 185 81.1
C03p71620 Brassica napus HOM05D011101 ORTHO05D013180 8.1e-68 260.8 185 81.1
BolC3t19453H Brassica oleracea HOM05D011101 ORTHO05D013180 8.1e-68 260.8 185 81.1
BraA06t25101Z Brassica rapa HOM05D011101 ORTHO05D013180 3.1e-67 258.8 185 81.6
Carub.0005s1357 Capsella rubella HOM05D011101 ORTHO05D013180 4.9e-57 224.9 161 82.0
BcaC01g02277 Brassica carinata HOM05D011101 ORTHO05D013180 5.1e-54 214.9 185 68.6
C03p67100 Brassica napus HOM05D011101 ORTHO05D013180 1.9e-40 169.9 185 58.9
BolC3t18991H Brassica oleracea HOM05D011101 ORTHO05D013180 1.9e-40 169.9 185 58.9
Cpa.g.sc111.15 Carica papaya HOM05D002107 ORTHO05D002067 2.8e-12 76.3 188 39.9
Actinidia35004 Actinidia chinensis HOM05D002107 ORTHO05D002067 3.1e-11 72.8 115 38.3
Cfa018931 Carpinus fangiana HOM05D002107 ORTHO05D002067 4.1e-11 72.4 110 46.4
MD06G1194700 Malus domestica HOM05D002107 ORTHO05D002067 1.0e-09 67.8 73 58.9
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.7e-09 67.0 142 41.5
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 2.3e-09 66.6 137 36.5
Haze_07315 Corylus avellana HOM05D002107 ORTHO05D002067 3.8e-09 65.9 89 53.9
FAN08G2822 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.0e-09 65.5 194 36.6
Ciclev10022426m.g Citrus clementina HOM05D002107 ORTHO05D002067 6.5e-09 65.1 191 32.5
FvH4_5g14810 Fragaria vesca HOM05D002107 ORTHO05D002067 1.1e-08 64.3 193 34.7
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.5e-08 63.9 97 40.2
Sed0018974 Sechium edule HOM05D002107 ORTHO05D002067 1.5e-08 63.9 114 47.4
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 1.9e-08 63.5 77 44.2
C04p46070 Brassica napus HOM05D002107 ORTHO05D002067 2.5e-08 63.2 112 37.5
BolC4t26192H Brassica oleracea HOM05D002107 ORTHO05D002067 2.5e-08 63.2 112 37.5
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.5e-08 63.2 142 40.8
A04p12390 Brassica napus HOM05D002107 ORTHO05D002067 3.2e-08 62.8 112 37.5
BraA04t16902Z Brassica rapa HOM05D002107 ORTHO05D002067 3.2e-08 62.8 112 37.5
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 3.2e-08 62.8 142 40.8
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.2e-08 62.8 142 40.8
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.2e-08 62.8 142 40.8
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.2e-08 62.8 142 40.8
FAN18G3479 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.2e-08 62.8 193 34.2
CSS0005295 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 4.2e-08 62.4 89 43.8
SalBow1G3475 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.2e-08 62.4 79 41.8
SalBow1G4949 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.2e-08 62.4 79 41.8
Aa31LG2G4190 Aethionema arabicum HOM05D002107 ORTHO05D002067 5.5e-08 62.0 113 38.1
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 7.2e-08 61.6 97 55.7
Thecc.04G084400 Theobroma cacao HOM05D002107 ORTHO05D002067 9.5e-08 61.2 95 41.1
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 1.2e-07 60.8 176 39.2
TAR374G0829 Trochodendron aralioides HOM05D002107 ORTHO05D002067 1.2e-07 60.8 184 38.0
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 1.6e-07 60.5 148 39.2
PGR083G0276 Punica granatum HOM05D002107 ORTHO05D002067 1.6e-07 60.5 84 52.4
CSS0038574 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 2.1e-07 60.1 191 35.1
Ca_18827_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 2.1e-07 60.1 96 37.5
Ca_30086_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 2.1e-07 60.1 96 37.5
Manes.01G034900 Manihot esculenta HOM05D002107 ORTHO05D002067 2.1e-07 60.1 125 36.0
Oeu014037.1 Olea europaea HOM05D002107 ORTHO05D002067 2.1e-07 60.1 67 47.8
Actinidia19036 Actinidia chinensis HOM05D002107 ORTHO05D002067 2.8e-07 59.7 69 46.4
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 2.8e-07 59.7 126 31.0
Lj3P1036T18 Lonicera japonica HOM05D002107 ORTHO05D002067 2.8e-07 59.7 71 66.2
Lj5C110T20 Lonicera japonica HOM05D002107 ORTHO05D002067 2.8e-07 59.7 105 36.2
CiPaw.05G133300 Carya illinoinensis HOM05D002107 ORTHO05D002067 3.6e-07 59.3 120 34.2
ClCG04G012200 Citrullus lanatus HOM05D002107 ORTHO05D002067 3.6e-07 59.3 109 45.0
Duzib205G1175 Durio zibethinus HOM05D002107 ORTHO05D002067 3.6e-07 59.3 200 38.0
Rhsim10G0037300 Rhododendron simsii HOM05D002107 ORTHO05D002067 3.6e-07 59.3 91 54.9
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 4.7e-07 58.9 95 52.6
Cc04_g16480 Coffea canephora HOM05D002107 ORTHO05D002067 4.7e-07 58.9 68 41.2
FAN13G1730 Fragaria x ananassa HOM05D002107 ORTHO05D002067 4.7e-07 58.9 193 33.7
Hma1.2p1_1936F.1_g308260 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 6.1e-07 58.5 195 33.8
QL10p017195 Quercus lobata HOM05D002107 ORTHO05D002067 6.1e-07 58.5 207 37.7
Sp7g02340 Schrenkiella parvula HOM05D002107 ORTHO05D002067 6.1e-07 58.5 112 36.6
CARHR262620 Cardamine hirsuta HOM05D002107 ORTHO05D002067 8.0e-07 58.2 95 38.9
Dinv34141 Davidia involucrata HOM05D002107 ORTHO05D002067 8.0e-07 58.2 69 63.8
CiPaw.12G012900 Carya illinoinensis HOM05D002107 ORTHO05D002067 1.0e-06 57.8 110 48.2
Haze_14513 Corylus avellana HOM05D002107 ORTHO05D002067 1.0e-06 57.8 69 62.3
Duzib084G0513 Durio zibethinus HOM05D002107 ORTHO05D002067 1.0e-06 57.8 201 38.3
Thhalv10028351m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 112 35.7
Glyma.14G170400 Glycine max HOM05D002107 ORTHO05D002067 1.0e-06 57.8 157 29.3
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 69 44.9
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.0e-06 57.8 69 44.9
PSO017G4518 Papaver somniferum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 92 53.3
AL7G50640 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 1.4e-06 57.4 97 38.1
Prupe.5G194800 Prunus persica HOM05D002107 ORTHO05D002067 1.4e-06 57.4 197 35.0
SalBow3G1393 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.4e-06 57.4 77 42.9
Solyc02g067220.4 Solanum lycopersicum HOM05D002107 ORTHO05D002067 1.4e-06 57.4 64 45.3
TWI75G1605 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.4e-06 57.4 119 44.5
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 1.8e-06 57.0 117 35.9
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 1.8e-06 57.0 92 38.0
Sopen02g016400 Solanum pennellii HOM05D002107 ORTHO05D002067 1.8e-06 57.0 60 48.3
PGSC0003DMG400025131 Solanum tuberosum HOM05D002107 ORTHO05D002067 1.8e-06 57.0 60 48.3
SGA_v2.0_scaffold413G51189 Striga asiatica HOM05D002107 ORTHO05D002067 1.8e-06 57.0 77 57.1
CAN.G206.162 Capsicum annuum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 142 39.4
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 2.3e-06 56.6 67 52.2
Psat7g135920 Pisum sativum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 68 42.6
AT5G39670 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 3.0e-06 56.2 95 36.8
Migut.H00932 Erythranthe guttata HOM05D002107 ORTHO05D002067 3.0e-06 56.2 69 59.4
BcaC08g44426 Brassica carinata HOM05D002107 ORTHO05D002067 4.0e-06 55.8 155 30.3
A07p20070 Brassica napus HOM05D002107 ORTHO05D002067 4.0e-06 55.8 133 31.6
C06p18630 Brassica napus HOM05D002107 ORTHO05D002067 4.0e-06 55.8 155 30.3
HanXRQChr12g0362211 Helianthus annuus HOM05D002107 ORTHO05D002067 4.0e-06 55.8 64 65.6
Oeu019465.1 Olea europaea HOM05D002107 ORTHO05D002067 4.0e-06 55.8 116 43.1
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 4.0e-06 55.8 71 43.7
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 95 38.9
BraA07t29706Z Brassica rapa HOM05D002107 ORTHO05D002067 5.2e-06 55.5 133 31.6
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 5.2e-06 55.5 95 38.9
HanXRQChr16g0503101 Helianthus annuus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 66 37.9
Lalb_Chr09g0329251 Lupinus albus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 91 38.5
Nitab4.5_0000568g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 115 43.5
Phvul.008G037300 Phaseolus vulgaris HOM05D002107 ORTHO05D002067 5.2e-06 55.5 95 52.6
HPP92_004332 Vanilla planifolia HOM05D002107 ORTHO05D002067 5.2e-06 55.5 132 33.3
CAN.G587.5 Capsicum annuum HOM05D023403 ORTHO05D022180 6.8e-06 55.1 65 43.1
Duzib264G1091 Durio zibethinus HOM05D002107 ORTHO05D002067 6.8e-06 55.1 69 58.0
Gohir.A04G147000 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.8e-06 55.1 111 35.1
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.8e-06 55.1 95 49.5
Lalb_Chr05g0220321 Lupinus albus HOM05D002107 ORTHO05D002067 6.8e-06 55.1 70 62.9
BcaC04g23853 Brassica carinata HOM05D002107 ORTHO05D002067 8.8e-06 54.7 95 38.9
C09p04120 Brassica napus HOM05D002107 ORTHO05D002067 8.8e-06 54.7 95 38.9
BolC9t53342H Brassica oleracea HOM05D002107 ORTHO05D002067 8.8e-06 54.7 95 38.9
CsaV3_1G005550 Cucumis sativus L. HOM05D002107 ORTHO05D002067 8.8e-06 54.7 112 47.3
Thhalv10005639m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 8.8e-06 54.7 127 37.8
Lsat_1_v5_gn_1_14080 Lactuca sativa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 187 27.3
Lsat_1_v5_gn_8_51200 Lactuca sativa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 89 41.6
Nn4g23202 Nelumbo nucifera HOM05D002107 ORTHO05D002067 8.8e-06 54.7 109 31.2
Nitab4.5_0004623g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 8.8e-06 54.7 69 43.5
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 8.8e-06 54.7 71 45.1
QL10p017202 Quercus lobata HOM05D002107 ORTHO05D002067 8.8e-06 54.7 116 48.3
Sopen02g032800 Solanum pennellii HOM05D002107 ORTHO05D002067 8.8e-06 54.7 154 29.9
unitig_0.g1797 Utricularia gibba HOM05D002107 ORTHO05D002067 8.8e-06 54.7 95 35.8


User provided reference genes

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