Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 6.0e-250 867.1 447 100.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.8e-228 794.7 451 92.0
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.3e-224 781.6 447 89.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.0e-217 758.4 447 87.7
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 4.8e-215 751.1 467 84.6
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 7.7e-205 717.2 452 85.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.7e-204 716.1 492 78.5
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.9e-203 712.6 452 85.0
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 7.4e-200 700.7 451 84.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 9.7e-200 700.3 452 83.8
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 6.3e-199 697.6 452 84.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 6.3e-183 644.4 457 76.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.0e-156 555.1 452 65.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 6.6e-156 554.7 454 66.3
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 8.6e-156 554.3 479 64.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.3e-153 546.2 453 66.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.4e-152 542.3 453 65.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.1e-150 537.3 454 64.8
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.4e-150 536.2 452 63.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.2e-150 535.8 455 64.6
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.4e-150 535.0 492 60.4
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 7.0e-150 534.6 458 63.8
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.7e-149 532.7 452 63.3
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.9e-148 528.9 454 64.1
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.1e-147 527.3 452 62.4
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.5e-147 526.9 451 63.6
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.5e-147 526.2 456 63.8
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 9.5e-147 524.2 458 64.0
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-146 523.9 455 64.2
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.8e-146 522.7 447 64.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.1e-146 521.2 452 63.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.1e-145 520.8 454 63.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.0e-145 518.8 443 64.1
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 5.2e-145 518.5 451 61.9
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.8e-145 518.1 452 63.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 8.9e-145 517.7 452 62.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.5e-144 516.9 454 63.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.0e-144 516.5 456 62.9
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 3.4e-144 515.8 452 63.1
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.4e-144 515.8 452 63.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.4e-144 515.4 454 63.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 4.4e-144 515.4 447 63.1
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.9e-144 514.2 451 61.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 9.9e-144 514.2 447 63.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-143 513.8 452 62.8
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.3e-143 513.8 454 62.3
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.7e-143 513.5 447 63.3
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.7e-143 512.3 452 62.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.3e-143 511.1 452 62.4
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 8.3e-143 511.1 452 62.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 9.2e-142 507.7 452 62.4
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.6e-141 506.9 453 62.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.6e-141 506.9 454 62.1
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-141 506.5 457 61.9
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 4.6e-141 505.4 454 62.1
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 6.0e-141 505.0 457 63.0
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 7.8e-141 504.6 454 61.2
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 7.3e-139 498.0 453 61.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.7e-138 495.4 447 61.7
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 6.2e-138 495.0 452 60.8
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 2.4e-137 493.0 453 60.5
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 5.2e-137 491.9 450 60.7
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 5.2e-137 491.9 455 62.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 6.8e-137 491.5 453 60.5
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.9e-137 491.1 454 60.1
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.4e-136 489.2 455 61.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.4e-136 488.8 448 59.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 7.6e-136 488.0 448 61.6
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.6e-136 488.0 494 56.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.9e-135 486.1 452 60.8
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.9e-135 486.1 470 58.9
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-135 486.1 452 58.6
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.8e-135 485.7 452 60.4
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.8e-135 485.7 451 61.2
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 6.4e-135 485.0 452 60.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.4e-135 485.0 452 60.4
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.4e-135 485.0 455 60.2
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 8.4e-135 484.6 452 60.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-134 483.8 445 62.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.1e-134 481.5 452 58.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.0e-133 478.4 454 60.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.0e-133 478.4 452 59.7
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.0e-133 478.4 452 59.7
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.6e-132 474.9 457 59.5
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.1e-131 474.2 437 60.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.5e-131 473.0 455 58.5
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 3.3e-131 472.6 452 58.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 9.6e-131 471.1 452 60.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 2.8e-130 469.5 445 59.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 9.9e-128 461.1 447 58.8
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.0e-125 451.8 452 57.1
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.7e-124 450.3 452 57.1
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.3e-122 444.1 452 56.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 4.8e-122 442.2 454 56.2
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 6.2e-122 441.8 453 56.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.8e-120 435.3 453 54.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.3e-119 434.1 454 56.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 7.1e-118 428.3 440 58.4
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.3e-116 424.1 453 55.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.0e-116 422.9 448 54.2
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 3.3e-115 419.5 451 55.2
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.4e-113 413.3 443 55.1
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 5.8e-112 408.7 470 51.7
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.7e-111 407.1 449 53.9
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.2e-109 401.0 447 54.1
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-109 399.8 386 59.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.9e-107 393.7 447 53.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.1e-106 390.2 453 53.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.1e-106 390.2 456 52.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.8e-106 389.8 481 50.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.4e-105 386.7 380 56.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.9e-105 385.2 326 63.5
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.1e-94 351.3 444 49.3
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.2e-94 349.7 467 48.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.7e-93 346.7 451 49.0
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.8e-90 336.7 479 46.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.4e-89 334.3 169 97.6
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 5.9e-88 328.9 451 47.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-87 326.6 387 52.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 6.5e-87 325.5 317 56.5
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.5e-86 322.4 384 51.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.4e-84 317.8 388 50.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.7e-82 309.7 316 57.0
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 8.2e-82 308.5 311 56.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.0e-68 263.5 216 65.7
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.0e-68 263.5 453 42.4
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.4e-67 260.0 453 42.2
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-60 237.3 262 52.3
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-60 237.3 262 52.3
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.4e-57 226.1 367 43.6
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.5e-56 223.4 132 87.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.2e-54 215.7 145 73.8
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.8e-52 209.1 334 41.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 7.0e-49 199.1 112 88.4
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.0e-44 185.3 140 70.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-44 185.3 137 72.3
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.3e-39 168.3 314 40.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 6.6e-39 166.0 122 74.6
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.9e-38 164.5 204 47.5
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 7.3e-38 162.5 94 87.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.3e-36 157.5 132 59.1
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.9e-30 137.9 91 74.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.3e-30 136.7 99 71.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 5.6e-30 136.3 74 83.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 2.8e-29 134.0 177 48.6
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.8e-28 129.4 252 38.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 2.6e-27 127.5 69 84.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.4e-25 121.7 68 79.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.4e-20 104.4 521 26.9
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.1e-12 79.0 54 72.2
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 9.0e-12 75.9 69 58.0
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 2.6e-11 74.3 93 47.3
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 9.6e-06 55.8 140 36.4


User provided reference genes

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