Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 0.0e+00 1148.7 593 100.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 7.3e-304 1046.6 596 92.1
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 9.6e-304 1046.2 595 91.9
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.3e-297 1025.8 595 90.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 5.8e-293 1010.4 596 88.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 8.4e-292 1006.5 592 88.0
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.9e-280 968.8 595 85.9
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 9.6e-280 966.5 595 86.2
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 2.1e-279 965.3 595 86.2
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 6.9e-278 960.3 591 85.8
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 4.2e-275 951.0 594 85.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.6e-274 949.1 594 85.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.4e-262 909.4 595 80.3
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.1e-254 881.7 593 79.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 4.4e-248 861.3 593 77.9
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 4.5e-245 851.3 570 80.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 4.4e-240 834.7 556 79.9
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 6.3e-231 804.3 591 75.8
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.0e-225 786.9 573 72.9
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.8e-221 770.8 602 68.1
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.2e-200 703.7 604 63.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.4e-200 701.8 604 63.2
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.9e-200 700.7 602 63.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.3e-199 700.3 605 63.6
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.4e-199 698.0 605 63.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.3e-195 685.3 601 61.6
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 5.6e-195 684.9 605 61.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.1e-193 680.6 613 61.5
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.1e-193 680.6 598 62.2
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.1e-193 679.1 594 61.4
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 7.6e-192 674.5 597 61.1
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 7.6e-192 674.5 599 60.8
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.2e-191 672.9 451 79.4
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 2.9e-191 672.5 608 60.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.4e-191 671.4 599 60.6
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.6e-189 666.8 605 60.8
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.1e-189 666.4 611 61.2
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 6.0e-189 664.8 600 60.3
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.0e-188 664.1 591 60.4
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 9.6e-187 657.5 596 61.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.1e-186 656.4 608 59.9
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.8e-186 656.0 605 61.3
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 2.8e-186 656.0 600 59.5
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.6e-186 655.6 596 60.6
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.6e-186 655.6 612 60.1
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-185 654.1 608 57.1
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.8e-185 653.3 581 63.0
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.4e-185 652.9 604 59.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 3.1e-185 652.5 588 60.4
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.5e-184 650.2 606 58.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 2.0e-184 649.8 605 58.3
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.6e-184 649.4 599 58.1
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.3e-183 647.1 598 59.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 2.2e-183 646.4 580 61.2
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 4.9e-183 645.2 599 60.1
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.9e-182 643.3 596 60.2
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.2e-182 642.5 631 57.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 4.2e-182 642.1 607 59.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 4.2e-182 642.1 611 58.3
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.4e-182 641.7 601 59.1
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.3e-182 641.0 609 57.3
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-181 640.6 590 59.5
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.6e-181 640.2 609 58.3
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.6e-181 638.6 581 59.4
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.0e-180 637.5 580 59.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.3e-180 636.3 585 59.0
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.0e-180 636.0 598 58.2
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.0e-180 636.0 590 59.8
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 6.6e-180 634.8 609 58.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 8.7e-180 634.4 471 68.6
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.1e-179 634.0 602 57.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.1e-179 634.0 600 57.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.5e-179 633.6 579 59.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.5e-179 633.6 601 57.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.3e-179 632.5 591 58.7
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.3e-179 632.1 609 57.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.3e-179 632.1 630 57.3
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 5.6e-179 631.7 621 56.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.6e-178 630.2 607 56.8
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 2.8e-178 629.4 595 57.6
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 8.1e-178 627.9 602 57.8
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 3.1e-177 625.9 632 55.2
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.2e-176 624.0 611 56.3
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.5e-176 623.6 603 56.9
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 2.0e-176 623.2 602 57.5
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 7.6e-176 621.3 603 58.2
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.3e-175 620.5 580 59.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.7e-175 620.2 604 57.6
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.9e-175 619.4 607 56.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 6.4e-175 618.2 603 56.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 6.4e-175 618.2 652 54.4
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 8.4e-175 617.8 549 61.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.4e-175 617.8 596 57.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-174 617.5 599 56.6
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.4e-174 617.1 597 58.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.4e-174 617.1 622 55.1
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.6e-173 613.6 609 56.7
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.5e-173 612.5 633 54.5
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.0e-172 609.4 531 62.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.0e-172 609.4 589 57.9
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 3.9e-172 609.0 517 63.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.7e-172 608.2 566 59.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 8.7e-172 607.8 622 55.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.1e-171 607.4 600 56.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.1e-171 607.4 549 61.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.5e-171 606.3 595 56.8
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 5.6e-171 605.1 619 54.6
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.8e-170 602.1 595 56.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.4e-169 599.7 609 55.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 2.4e-169 599.7 608 54.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.5e-168 595.5 552 59.1
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-167 594.0 601 55.6
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 8.4e-167 591.3 599 54.8
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.2e-166 589.3 612 54.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.1e-165 586.6 616 55.2
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.7e-165 586.3 575 57.0
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 2.7e-165 586.3 614 54.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.7e-164 581.6 626 52.9
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.1e-163 580.9 613 54.2
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.5e-163 580.5 601 54.7
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-161 573.9 484 65.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.4e-161 573.9 635 50.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-161 573.2 651 52.2
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 5.3e-161 572.0 635 50.4
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.0e-160 570.1 597 54.6
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.0e-159 567.8 598 52.7
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 7.1e-158 561.6 599 51.8
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.5e-155 553.9 582 54.5
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.3e-155 552.4 554 54.5
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 5.7e-155 552.0 575 53.6
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.5e-152 543.9 583 53.2
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.6e-152 543.1 600 51.0
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.9e-150 537.0 459 61.4
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.9e-147 526.9 517 55.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 9.7e-147 524.6 583 52.5
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.0e-140 503.1 586 48.5
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.5e-136 489.2 616 48.4
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 3.9e-132 476.1 601 48.1
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.3e-130 471.1 597 47.1
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 3.8e-127 459.5 579 47.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.8e-122 442.6 441 56.0
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.5e-118 431.0 376 62.0
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 8.9e-108 395.2 340 61.2
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 1.1e-105 388.3 393 52.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.2e-101 374.8 648 37.8
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 4.0e-92 343.2 337 56.1
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.0e-91 340.9 315 58.1
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.0e-79 300.4 384 48.2
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 8.7e-63 245.7 163 76.7
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-58 231.1 259 52.9
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.5e-51 208.4 245 50.2
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.9e-50 204.1 227 54.2
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.2e-40 172.2 346 34.1
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.8e-37 160.2 141 61.0
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.1e-33 149.1 477 25.2
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.7e-29 135.2 167 50.9
BcaB01g00170 Brassica carinata HOM05D002220 ORTHO05D008182 1.4e-28 132.1 105 73.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 2.2e-26 124.8 559 24.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 8.2e-21 106.3 148 41.9
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.2e-18 98.2 104 46.2
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 5.0e-18 97.1 79 53.2
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.5e-17 95.5 88 51.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.0e-15 89.4 72 59.7
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 6.7e-15 86.7 83 56.6
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.8e-13 80.5 95 48.4
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 6.3e-13 80.1 66 63.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 6.3e-13 80.1 100 45.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 2.9e-10 71.2 103 40.8
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.9e-10 71.2 200 29.5
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.4e-09 66.2 392 26.3
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 7.5e-06 56.6 35 80.0


User provided reference genes

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