Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.8e-111 406.0 217 100.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-84 317.0 208 85.1
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.3e-82 309.3 168 96.4
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-80 303.5 168 94.6
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-80 303.5 168 94.6
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.3e-80 303.5 168 94.6
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.3e-80 303.5 168 94.6
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.2e-80 302.8 168 94.0
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.2e-80 302.8 168 94.0
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 4.9e-80 301.6 168 94.0
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 7.8e-78 294.3 168 94.0
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 7.8e-78 294.3 168 94.0
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 5.0e-77 291.6 169 92.9
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 5.0e-77 291.6 169 92.9
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-76 289.3 168 91.1
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 4.3e-76 288.5 168 91.7
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 4.3e-76 288.5 168 91.7
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.6e-75 286.6 168 91.1
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.7e-75 285.0 168 88.7
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-74 283.5 168 90.5
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.3e-74 282.7 168 88.7
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 3.1e-74 282.3 165 90.9
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 4.0e-74 282.0 168 89.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.4e-73 278.9 169 88.8
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.5e-68 262.7 171 81.3
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 5.2e-66 255.0 171 81.3
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 8.9e-66 254.2 171 81.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-65 253.8 171 80.7
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.0e-65 253.1 171 80.7
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.0e-65 253.1 171 80.7
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.4e-65 252.3 170 79.4
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 5.8e-65 251.5 168 78.0
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.2e-64 249.6 170 79.4
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.1e-63 247.3 169 80.5
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.9e-63 246.5 171 77.2
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.2e-62 243.8 196 69.4
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.1e-62 243.0 172 75.0
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.0e-61 240.7 172 75.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.0e-61 240.7 169 75.7
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.3e-61 239.6 170 75.3
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 2.3e-61 239.6 183 71.0
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.5e-60 236.9 168 71.4
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.5e-60 236.1 169 74.6
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 5.6e-60 235.0 168 73.2
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.6e-59 233.4 169 71.0
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 2.1e-59 233.0 168 70.8
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 2.1e-59 233.0 168 72.6
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 2.1e-59 233.0 168 72.6
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.2e-59 231.5 168 70.8
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.1e-58 230.7 167 74.3
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.1e-58 230.7 168 70.2
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.1e-58 230.7 168 72.6
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.4e-58 230.3 170 72.9
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 1.4e-58 230.3 168 69.0
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.8e-58 229.9 169 72.2
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.4e-58 229.6 168 70.8
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 3.1e-58 229.2 169 72.8
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 4.0e-58 228.8 169 71.6
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.2e-58 228.4 169 69.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 5.2e-58 228.4 171 73.7
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.9e-58 228.0 168 69.6
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 8.9e-58 227.6 171 71.3
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.2e-57 227.3 171 71.3
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-57 227.3 170 72.4
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 2.6e-57 226.1 169 71.6
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.6e-57 226.1 169 71.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 2.6e-57 226.1 168 70.2
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 3.4e-57 225.7 169 69.2
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 3.4e-57 225.7 168 67.9
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 4.4e-57 225.3 170 70.6
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 4.4e-57 225.3 169 71.0
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 5.8e-57 224.9 168 69.6
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 9.9e-57 224.2 168 70.8
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 9.9e-57 224.2 170 70.6
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 9.9e-57 224.2 170 70.6
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 1.3e-56 223.8 168 69.0
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.3e-56 223.8 170 68.8
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.7e-56 223.4 172 70.3
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-56 223.0 169 72.2
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.9e-56 222.6 170 70.6
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.9e-56 222.6 169 69.8
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.9e-56 222.6 169 72.2
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 3.8e-56 222.2 168 68.5
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 4.9e-56 221.9 170 68.8
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.9e-56 221.9 170 68.2
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 4.9e-56 221.9 169 68.6
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 6.4e-56 221.5 171 67.8
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 8.4e-56 221.1 170 71.2
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 8.4e-56 221.1 168 67.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 8.4e-56 221.1 172 70.9
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.1e-55 220.7 172 70.9
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.1e-55 220.7 168 67.9
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.4e-55 220.3 168 70.8
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.4e-55 220.3 171 69.0
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.9e-55 219.9 168 71.4
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-55 219.5 172 67.4
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.4e-55 219.5 169 68.0
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.4e-55 219.5 169 67.5
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.4e-55 219.5 169 69.2
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.4e-55 219.5 169 68.6
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.1e-55 218.0 170 68.2
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.1e-54 216.5 164 71.3
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.1e-54 216.5 169 68.0
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 2.1e-54 216.5 170 68.8
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.5e-54 215.7 169 67.5
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 6.0e-54 214.9 173 69.4
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 6.0e-54 214.9 171 69.6
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 7.8e-54 214.5 169 67.5
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.0e-53 214.2 168 65.5
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.7e-53 213.4 169 65.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 3.0e-53 212.6 168 68.5
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.9e-53 212.2 164 68.3
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 5.1e-53 211.8 168 67.3
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 6.6e-53 211.5 173 65.9
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 8.7e-53 211.1 170 67.6
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.1e-52 210.7 171 63.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.1e-52 210.7 166 68.1
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 7.3e-52 208.0 168 66.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.3e-51 207.2 170 67.6
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.1e-51 206.5 166 67.5
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.6e-51 205.7 167 64.7
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.6e-51 205.7 168 67.3
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.4e-50 203.0 162 69.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.1e-50 202.6 161 65.2
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 3.1e-50 202.6 169 66.3
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 4.0e-50 202.2 169 63.9
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.9e-50 201.4 155 72.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 9.0e-50 201.1 169 65.7
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 5.8e-49 198.4 164 62.8
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.3e-48 197.2 169 65.7
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 6.4e-48 194.9 157 65.6
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.4e-47 193.7 168 62.5
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 2.4e-47 193.0 170 62.4
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 3.2e-47 192.6 172 62.2
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 2.7e-46 189.5 171 62.0
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 2.7e-46 189.5 171 62.0
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.3e-45 187.2 174 60.9
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-43 180.3 102 82.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 2.4e-42 176.4 169 60.9
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 5.3e-42 175.3 102 79.4
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 9.0e-42 174.5 170 58.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 2.0e-41 173.3 145 68.3
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 2.2e-40 169.9 169 59.8
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 3.8e-40 169.1 99 79.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.1e-38 163.3 100 74.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 4.6e-38 162.2 176 52.3
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.5e-33 147.1 171 47.4
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.6e-33 146.4 146 56.2
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.0e-32 144.4 174 46.6
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 2.9e-32 142.9 218 43.6
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.4e-31 140.6 171 47.4
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 6.0e-30 135.2 174 42.5
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 8.7e-29 131.3 170 42.4
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 9.6e-28 127.9 153 48.4
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 1.6e-27 127.1 145 49.7
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.7e-27 125.9 70 81.4
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.4e-26 123.2 70 80.0
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 6.9e-26 121.7 117 53.8
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 2.9e-24 116.3 170 44.1
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.5e-23 112.1 173 43.9
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.8e-21 107.1 180 43.9
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-19 100.1 67 71.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-17 94.0 67 67.2
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.4e-13 80.9 44 79.5
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 4.2e-07 59.3 68 58.8


User provided reference genes

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