Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 6.9e-193 677.2 351 100.0
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 3.4e-176 621.7 351 92.9
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.0e-172 610.1 352 91.2
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 6.7e-172 607.4 352 91.2
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 9.7e-171 603.6 354 91.0
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.2e-170 602.4 354 89.5
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 3.7e-170 601.7 352 91.2
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 3.7e-170 601.7 352 91.2
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 8.2e-170 600.5 352 90.9
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 7.0e-169 597.4 355 90.1
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.5e-168 595.1 356 89.0
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 7.7e-168 594.0 355 89.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 2.1e-165 585.9 352 88.9
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 6.1e-165 584.3 354 89.5
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 5.5e-158 561.2 352 84.4
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 4.7e-157 558.1 352 83.5
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-142 510.4 355 79.7
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 9.2e-137 490.7 351 73.2
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 4.3e-134 481.9 297 81.8
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.6e-133 479.9 312 79.2
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.8e-133 479.2 298 81.5
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 8.0e-133 477.6 351 71.5
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 6.8e-132 474.6 304 79.9
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 8.9e-132 474.2 301 78.4
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 8.9e-132 474.2 301 78.4
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 2.0e-131 473.0 308 78.6
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.4e-131 472.2 354 70.3
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 5.8e-131 471.5 317 75.7
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 9.8e-131 470.7 317 77.0
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 9.8e-131 470.7 347 71.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.3e-130 470.3 304 80.3
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 2.9e-130 469.2 304 80.3
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.1e-129 467.2 308 78.2
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.9e-129 466.5 302 79.1
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.4e-129 466.1 314 75.5
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 2.4e-129 466.1 301 78.4
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.4e-129 466.1 302 79.8
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.4e-129 466.1 351 69.2
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 7.0e-129 464.5 314 75.2
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 7.0e-129 464.5 322 73.6
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 9.2e-129 464.2 304 79.9
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 1.6e-128 463.4 300 79.0
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.7e-128 462.6 317 76.3
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.7e-128 462.6 302 79.1
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 6.0e-128 461.5 300 79.0
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 6.0e-128 461.5 313 76.7
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.3e-127 459.5 314 74.8
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 3.9e-127 458.8 317 74.1
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.0e-127 458.4 299 77.9
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 5.0e-127 458.4 300 77.0
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 5.0e-127 458.4 314 76.1
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 6.6e-127 458.0 300 76.7
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 6.6e-127 458.0 300 77.0
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 8.6e-127 457.6 351 70.4
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.1e-126 457.2 298 77.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.1e-126 457.2 353 69.4
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 1.9e-126 456.4 299 78.3
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 2.5e-126 456.1 300 75.7
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 2.5e-126 456.1 298 76.5
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 3.3e-126 455.7 299 76.3
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 4.3e-126 455.3 333 71.8
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 4.3e-126 455.3 351 68.1
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 5.6e-126 454.9 300 76.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 7.3e-126 454.5 299 76.9
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.2e-125 453.8 291 79.0
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.8e-125 452.6 291 79.0
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.6e-125 452.2 296 77.7
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 3.6e-125 452.2 317 72.9
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 6.2e-125 451.4 355 68.2
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 5.2e-124 448.4 301 75.4
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 8.9e-124 447.6 301 75.4
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 2.9e-122 442.6 340 69.1
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 3.7e-122 442.2 312 74.0
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 4.1e-121 438.7 309 72.8
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 7.1e-121 438.0 305 73.4
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 7.8e-120 434.5 304 73.7
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 9.5e-118 427.6 295 75.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 8.1e-117 424.5 287 76.7
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 2.3e-116 422.9 300 73.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 5.8e-115 418.3 297 73.7
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 5.8e-115 418.3 297 72.7
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 9.9e-115 417.5 299 72.6
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 1.3e-114 417.2 349 62.2
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.9e-114 416.0 351 65.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.1e-113 414.1 299 69.9
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 4.1e-113 412.1 296 72.3
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 7.1e-113 411.4 299 71.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 7.1e-113 411.4 322 67.7
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.1e-112 409.8 299 71.6
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.1e-112 409.8 258 82.2
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.7e-111 406.8 297 70.7
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 3.0e-111 406.0 323 64.7
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 5.1e-111 405.2 298 70.5
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 5.1e-111 405.2 268 78.0
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.1e-110 404.1 344 61.6
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.1e-110 404.1 314 66.2
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.5e-110 403.7 344 61.6
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.2e-109 400.6 302 68.9
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.6e-109 400.2 298 69.1
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 3.6e-109 399.1 303 70.0
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.6e-109 399.1 344 61.6
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 3.6e-109 399.1 293 71.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 4.7e-109 398.7 314 65.3
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.8e-108 396.7 308 67.2
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 4.0e-108 395.6 302 68.9
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 5.2e-108 395.2 308 66.9
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 9.9e-107 391.0 325 65.5
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 2.4e-105 386.3 280 70.4
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 1.2e-104 384.0 255 75.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.3e-103 380.6 258 73.3
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-103 380.2 354 59.0
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 5.1e-103 378.6 347 58.8
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 5.6e-102 375.2 257 72.8
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.1e-101 373.2 325 63.7
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 6.2e-101 371.7 314 62.7
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.4e-100 369.8 345 58.8
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 3.1e-100 369.4 267 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.1e-97 358.2 241 76.8
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.5e-91 340.5 282 65.6
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 3.0e-87 326.2 289 57.8
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.6e-85 320.5 253 63.2
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.5e-83 313.9 268 64.6
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.2e-81 306.2 177 88.1
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.5e-75 285.8 293 53.2
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.0e-66 258.1 290 54.1
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 72.3
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.0e-63 248.1 188 68.6
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-51 207.2 146 71.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.0e-43 180.6 103 87.4
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 4.2e-41 172.9 123 65.9
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-40 171.0 103 86.4
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-25 121.7 63 100.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.2e-20 103.6 60 88.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.2e-19 101.7 192 31.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 1.5e-09 68.2 45 64.4


User provided reference genes

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