Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 3229.5 1768 100.0
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2937.9 1812 87.6
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2858.2 1814 86.5
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2841.2 1814 84.7
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2833.1 1794 88.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2829.7 1818 84.5
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2829.7 1823 85.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2823.9 1814 84.4
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2805.8 1823 84.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2764.6 1819 83.1
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2655.2 1838 81.1
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2356.3 1843 74.4
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2355.9 1840 71.4
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2144.4 1865 66.2
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2132.1 1896 65.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2130.1 1865 66.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2111.6 1902 66.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2105.9 1899 64.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2102.4 1914 64.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2095.5 1841 65.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2078.9 1908 64.3
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2074.3 1847 63.7
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2061.2 1900 61.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2054.6 1898 63.1
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2049.2 1893 63.0
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2048.1 1893 62.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2046.6 1895 61.5
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2034.2 1909 61.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2033.8 1895 62.1
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2030.4 1884 62.7
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2029.6 1866 61.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2028.4 1885 62.2
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2025.8 1880 62.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2022.7 1909 62.3
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2021.5 1900 61.6
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2021.1 1885 61.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2018.8 1898 61.6
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2011.5 1890 61.4
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2011.1 1905 61.7
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2010.7 1900 61.0
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2010.0 1924 62.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2003.0 1890 61.5
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 1999.2 1901 60.8
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 1996.5 1882 60.6
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1995.3 1892 61.0
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 1986.5 1888 60.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 1983.4 1858 59.5
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1983.0 1885 60.8
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 1982.6 1894 59.8
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 1972.6 1932 59.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1970.7 1883 60.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1968.4 1869 61.9
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1968.4 1887 59.4
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1952.6 1876 64.0
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 1946.0 1864 59.5
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1944.9 1988 58.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 1940.6 2110 55.8
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 1940.2 1888 60.8
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 1936.8 1888 60.7
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 1935.2 1692 63.8
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 1930.6 1819 61.2
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1918.7 1868 59.4
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1917.9 1848 59.1
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 1916.0 1831 60.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 1912.9 1886 59.1
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1909.8 1891 60.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1903.3 1883 59.1
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1901.7 1869 61.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1900.2 1873 62.6
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1899.4 1875 62.7
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1896.3 1861 60.4
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1895.6 1390 76.5
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1894.4 1879 57.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1894.0 1879 62.5
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1891.3 1890 58.7
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1887.8 2232 51.7
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1876.3 2101 56.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1873.6 1878 62.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1865.1 1723 63.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1852.4 1847 59.7
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1835.5 1943 56.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1828.5 1874 56.4
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1798.5 1944 53.9
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1794.2 1733 60.2
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1789.2 1371 67.9
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1765.4 1740 60.7
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1761.5 1889 57.3
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1720.7 1780 57.8
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1592.0 1834 51.5
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1584.7 1986 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1559.3 1966 49.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1495.3 1722 51.2
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1468.8 1518 59.2
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1466.8 1819 54.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1455.3 1496 58.0
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1392.9 1858 48.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1320.1 936 72.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1233.8 1077 63.7
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1160.2 1223 60.7
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1140.6 1217 58.5
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1132.9 1220 57.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1111.3 1187 56.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1079.3 849 66.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 5.9e-309 1065.1 1068 59.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.9e-299 1033.5 934 61.3
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 3.0e-276 956.4 1274 44.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.5e-267 926.8 1093 56.8
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 7.3e-267 925.2 679 71.6
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.1e-266 923.7 1134 56.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.4e-246 857.8 634 70.7
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.2e-204 716.5 950 57.2
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.7e-197 694.1 1319 35.6
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.9e-192 676.4 835 56.6
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 8.9e-164 582.8 446 70.4
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 2.5e-158 564.7 374 76.2
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.9e-146 523.9 366 72.4
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-145 522.3 297 87.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.4e-137 495.7 1316 30.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.9e-135 487.6 363 69.1
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.6e-134 483.8 367 68.1
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.3e-100 370.9 496 45.8
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.2e-96 359.8 264 73.9
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.2e-90 339.0 294 62.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.3e-82 312.4 198 78.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.3e-77 294.3 238 66.8
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.6e-75 289.7 1403 23.4
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.3e-73 281.6 261 60.9
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 8.9e-71 273.9 190 76.8
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.4e-68 266.5 172 75.0
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.9e-60 239.6 170 70.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.6e-59 236.5 1553 23.8
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.2e-53 216.1 506 33.8
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.4e-52 213.4 167 63.5
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.0e-51 208.0 277 48.4
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.3e-50 206.8 238 50.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.3e-49 201.1 179 58.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 5.6e-41 174.9 163 60.1
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.1e-40 172.9 517 40.2
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 5.8e-38 164.9 229 51.1
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 7.8e-35 154.5 88 81.8
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 7.8e-35 154.5 106 70.8
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.0e-34 152.5 222 45.0
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.1e-31 144.1 391 34.5
BcaB04g17716 Brassica carinata HOM05D003986 ORTHO05D004916 2.9e-29 136.0 118 64.4
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.4e-28 133.7 559 30.9
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.6e-27 130.2 157 53.5
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 3.5e-27 129.0 87 71.3
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 4.6e-27 128.6 93 77.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.3e-26 127.1 75 88.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.5e-25 122.9 82 76.8
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 5.6e-25 121.7 74 83.8
C09p31860 Brassica napus HOM05D013511 ORTHO05D018728 1.6e-24 120.2 209 48.3
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-24 119.8 69 88.4
BolC9t56042H Brassica oleracea HOM05D013511 ORTHO05D018728 8.1e-24 117.9 203 48.8
C07p16690 Brassica napus HOM05D013511 ORTHO05D018728 1.4e-23 117.1 203 48.8
C05p29910 Brassica napus HOM05D013511 ORTHO05D018728 2.6e-22 112.8 206 47.1
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 3.2e-20 105.9 61 85.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 3.9e-18 99.0 128 48.4
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 8.7e-18 97.8 68 73.5
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 8.7e-18 97.8 68 73.5
BcaC06g35388 Brassica carinata HOM05D013511 ORTHO05D018728 1.1e-17 97.4 180 47.2
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.5e-17 97.1 58 82.8
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 7.4e-17 94.7 68 72.1
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.7e-16 92.4 82 57.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 8.2e-16 91.3 88 53.4
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.5e-12 79.7 113 48.7
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.2e-11 77.4 53 81.1
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.1e-11 76.6 65 63.1
BraA06t27559Z Brassica rapa HOM05D013511 ORTHO05D018728 7.9e-11 74.7 100 57.0
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 5.1e-10 72.0 36 83.3
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.5e-09 70.5 73 53.4
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.3e-09 68.9 80 48.8
BraA06t27558Z Brassica rapa HOM05D013511 ORTHO05D018728 5.7e-09 68.6 71 64.8
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 5.7e-09 68.6 51 64.7
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.2e-08 66.6 69 46.4
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.8e-08 65.5 75 44.0
C09p39220 Brassica napus HOM05D053061 ORTHO05D041243 3.4e-06 59.3 31 87.1
BolC9t56800H Brassica oleracea HOM05D053061 ORTHO05D041243 3.4e-06 59.3 31 87.1
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 4.5e-06 58.9 57 54.4


User provided reference genes

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