Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 0.0e+00 4093.9 2213 100.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 0.0e+00 2818.1 2250 72.8
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 2669.0 2252 70.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 0.0e+00 2580.4 2084 70.6
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 0.0e+00 2436.4 2085 68.0
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 2390.1 2248 64.3
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 2388.6 2248 64.3
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 0.0e+00 2303.5 2259 63.3
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 0.0e+00 2048.5 2236 59.0
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 1936.8 2243 56.4
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 1931.8 2243 56.3
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 0.0e+00 1847.8 2237 54.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 0.0e+00 1839.7 2238 54.7
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 0.0e+00 1809.3 2346 52.4
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 0.0e+00 1387.9 2268 46.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 8.8e-310 1068.1 1684 47.1
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 8.4e-212 742.7 1461 42.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.4e-168 597.4 2149 32.3
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 7.0e-166 590.1 2129 33.1
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 2.9e-164 584.7 2161 31.7
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.5e-155 555.8 848 49.4
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 9.5e-155 553.1 2202 31.2
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.3e-153 548.5 2145 30.8
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.4e-150 538.5 2199 31.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.6e-149 534.3 2182 31.5
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 7.8e-149 533.5 777 50.2
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 5.0e-148 530.8 2182 31.6
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-147 529.6 2170 30.0
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 4.3e-147 527.7 2166 31.3
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 9.5e-147 526.6 2168 30.9
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.2e-146 526.2 2201 30.8
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 3.6e-146 524.6 836 48.3
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.4e-145 522.7 2190 29.0
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.5e-144 519.2 781 49.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.5e-144 519.2 2173 31.6
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.7e-143 515.8 2091 30.8
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 2.2e-143 515.4 790 48.0
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.4e-142 511.9 981 43.4
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.2e-141 509.6 2189 31.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.0e-140 506.5 791 46.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.7e-140 505.8 2135 30.8
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 3.0e-140 505.0 785 47.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.9e-140 504.6 791 46.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.5e-139 501.9 792 46.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.3e-139 501.1 792 47.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 7.3e-139 500.4 730 51.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 7.3e-139 500.4 1996 31.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.2e-138 499.6 789 46.6
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.2e-138 497.3 786 49.5
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.1e-137 495.0 783 47.1
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.0e-136 492.3 772 48.6
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 3.4e-136 491.5 780 47.4
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 9.9e-136 490.0 756 48.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 9.9e-136 490.0 791 47.3
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.1e-134 486.5 782 47.8
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-134 486.1 748 48.7
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.9e-134 485.7 747 48.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.4e-134 485.3 791 46.3
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.1e-133 482.3 797 44.5
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.5e-133 481.5 2135 31.1
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.8e-130 471.9 2128 30.2
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 4.7e-130 471.1 2002 30.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.1e-129 468.4 2146 30.5
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.0e-129 468.0 2029 29.9
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 5.8e-128 464.2 811 45.1
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 5.4e-126 457.6 746 48.8
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 5.4e-126 457.6 479 61.8
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 7.8e-125 453.8 798 45.5
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.0e-124 451.8 775 45.3
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 5.1e-124 451.1 2049 30.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 6.6e-124 450.7 2031 29.9
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.1e-123 449.9 2022 28.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.1e-121 441.8 2172 30.7
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.3e-121 441.0 702 48.4
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 4.4e-120 438.0 2108 30.7
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.2e-117 429.9 819 41.3
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 6.0e-117 427.6 773 45.3
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 7.8e-117 427.2 797 45.2
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.5e-115 422.9 763 47.3
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.8e-114 418.7 795 44.7
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 8.1e-114 417.2 873 42.3
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.3e-111 409.8 780 45.1
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 3.8e-111 408.3 677 47.1
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 4.2e-110 404.8 774 43.7
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 7.1e-110 404.1 960 35.0
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 8.7e-108 397.1 601 44.3
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 2.4e-105 389.0 745 44.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.7e-103 382.9 787 40.8
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.1e-101 375.9 2036 29.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.1e-100 371.3 490 54.5
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 9.6e-99 367.1 788 40.7
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.0e-97 361.7 770 41.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 9.0e-97 360.5 832 39.7
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.1e-93 349.4 521 49.7
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 6.0e-93 347.8 771 41.4
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.3e-92 346.7 730 43.0
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.0e-92 345.5 787 40.8
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.7e-90 338.6 809 40.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.4e-89 335.9 631 38.7
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 9.0e-89 334.0 2164 27.1
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.3e-87 330.1 978 34.8
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 7.9e-85 320.9 2168 28.1
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.8e-81 309.7 511 41.3
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.0e-80 306.2 814 36.9
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 1.4e-78 300.1 259 65.6
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.1e-76 291.6 591 39.4
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.7e-74 285.4 788 37.1
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.1e-73 283.9 2142 26.9
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.8e-73 283.1 506 47.0
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 7.7e-72 277.7 335 55.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.8e-68 264.2 288 51.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.2e-61 243.8 257 51.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.0e-60 240.7 1904 25.6
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 4.2e-54 218.8 542 40.6
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.6e-53 216.9 255 59.6
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.9e-48 198.4 224 51.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 3.3e-46 192.6 490 37.8
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 1.4e-36 160.6 106 77.4
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-34 154.1 144 56.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.3e-30 139.4 81 81.5
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.1e-28 134.4 570 28.9
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.8e-28 133.7 213 40.8
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.2e-27 131.0 919 25.4
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 9.8e-27 127.9 481 30.4
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.8e-21 109.8 203 53.7
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 4.4e-19 102.4 394 36.8
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.7e-18 100.5 297 32.3
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 7.8e-16 91.7 135 43.0
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.0e-15 91.3 253 30.8
BcaB03g12812 Brassica carinata HOM05D000237 ORTHO05D006530 3.0e-15 89.7 65 70.8
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 3.3e-14 86.3 92 55.4
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.8e-12 80.5 140 39.3
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.4e-11 75.9 99 44.4
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 7.6e-11 75.1 266 34.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-09 70.9 454 26.7
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.4e-09 70.1 292 28.8
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.2e-09 69.3 131 38.2


User provided reference genes

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