Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 5.5e-195 684.1 339 100.0
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.2e-181 639.8 340 92.9
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 4.1e-174 614.8 340 90.3
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 9.1e-174 613.6 339 89.7
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 3.4e-173 611.7 340 89.4
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 5.3e-166 587.8 344 85.8
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.3e-164 583.2 343 87.8
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 1.1e-163 580.1 342 87.1
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.2e-162 576.6 343 86.9
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.2e-162 576.6 343 86.9
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.4e-161 573.2 345 87.0
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 1.7e-151 539.7 343 83.1
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 1.3e-143 513.5 341 77.7
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.8e-129 466.5 352 67.6
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 4.3e-123 445.3 226 94.7
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.7e-119 433.3 339 65.2
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 8.3e-111 404.4 291 68.4
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 2.6e-104 382.9 355 57.7
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.9e-102 376.7 347 57.1
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 2.4e-102 376.3 324 60.2
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.3e-100 370.5 332 58.4
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 6.6e-100 368.2 323 58.5
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 6.6e-100 368.2 224 75.0
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 8.7e-100 367.9 314 61.1
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.1e-99 367.5 247 70.4
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.9e-99 366.7 314 60.8
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.2e-98 364.0 288 61.8
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 6.2e-98 361.7 303 60.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 8.1e-98 361.3 349 55.9
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 2.4e-97 359.8 268 67.2
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.4e-97 359.8 226 72.6
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 4.0e-97 359.0 226 72.1
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 9.0e-97 357.8 343 54.8
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 2.6e-96 356.3 288 60.4
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 2.9e-95 352.8 346 54.9
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 4.9e-95 352.1 229 67.7
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 1.1e-94 350.9 305 55.4
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.1e-94 350.9 344 56.4
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.9e-94 350.1 233 69.5
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.2e-93 347.4 223 72.2
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.6e-93 347.1 336 56.8
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.6e-93 347.1 335 53.1
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 2.7e-93 346.3 330 55.8
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.7e-93 346.3 309 56.3
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 2.7e-93 346.3 344 55.8
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 3.5e-93 345.9 221 73.8
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.5e-93 345.9 327 56.9
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 6.0e-93 345.1 318 55.7
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 7.8e-93 344.7 300 58.3
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.0e-92 344.4 221 72.4
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.3e-92 344.0 234 69.7
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.0e-92 342.8 331 55.0
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 3.9e-92 342.4 302 58.6
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 6.6e-92 341.7 325 56.0
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 8.7e-92 341.3 333 54.4
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 8.7e-92 341.3 318 55.7
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 8.7e-92 341.3 306 54.9
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.1e-91 340.9 335 54.3
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 1.5e-91 340.5 225 69.3
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.5e-91 340.5 226 69.5
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.9e-91 340.1 225 69.8
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.3e-91 339.3 222 71.2
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 3.3e-91 339.3 345 53.0
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.6e-91 338.6 333 54.4
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 5.6e-91 338.6 233 68.7
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.6e-91 337.8 220 70.5
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 9.6e-91 337.8 263 61.2
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 2.1e-90 336.7 325 56.0
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 2.1e-90 336.7 232 67.2
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 4.8e-90 335.5 228 67.5
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.2e-90 335.1 257 63.0
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 6.2e-90 335.1 298 57.4
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.1e-89 334.3 288 58.3
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 2.4e-89 333.2 226 70.4
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 4.0e-89 332.4 225 66.7
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 4.0e-89 332.4 384 49.5
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 5.3e-89 332.0 250 62.0
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 6.9e-89 331.6 262 59.9
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 9.0e-89 331.3 292 57.9
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 2.6e-88 329.7 226 67.7
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.6e-88 329.7 262 59.2
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 2.6e-88 329.7 262 59.2
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 4.5e-88 328.9 303 53.8
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 8.4e-87 324.7 335 51.9
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 3.2e-86 322.8 225 63.6
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.2e-85 320.9 259 62.5
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.0e-84 317.8 321 51.7
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.0e-84 317.8 225 67.6
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.3e-84 317.4 221 66.1
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.8e-84 317.0 300 54.3
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.8e-84 317.0 225 64.4
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 5.1e-84 315.5 208 69.7
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 1.5e-83 313.9 277 59.6
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 2.1e-82 310.1 240 58.8
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.8e-82 309.7 321 49.5
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 6.2e-82 308.5 301 54.5
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 2.4e-81 306.6 326 51.2
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 2.4e-81 306.6 292 54.5
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 9.9e-80 301.2 272 56.6
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.9e-80 301.2 195 73.8
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.2e-77 294.3 240 57.5
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.3e-75 286.2 216 59.3
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 2.8e-74 283.1 243 56.0
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 3.1e-73 279.6 213 61.0
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 6.9e-73 278.5 198 65.7
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 2.6e-72 276.6 225 57.3
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.4e-72 276.2 304 48.4
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 5.8e-72 275.4 234 56.4
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.4e-70 270.8 210 59.0
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 4.2e-70 269.2 165 75.8
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.0e-68 264.6 372 42.5
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 3.0e-68 263.1 210 57.1
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 8.7e-68 261.5 224 54.0
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.7e-67 258.8 232 52.2
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 7.4e-67 258.5 210 56.2
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 2.9e-63 246.5 249 48.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 1.1e-62 244.6 216 54.2
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 7.2e-62 241.9 151 68.2
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 1.2e-61 241.1 224 50.9
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 3.6e-61 239.6 230 56.5
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.1e-59 234.6 187 59.9
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 9.7e-59 231.5 250 52.8
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.8e-57 227.3 155 71.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 5.7e-51 205.7 182 53.3
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 4.1e-49 199.5 216 46.3
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.2e-48 198.0 137 65.0
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 5.3e-41 172.6 237 40.5
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 7.5e-35 152.1 164 44.5
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 9.7e-35 151.8 99 73.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.8e-34 150.2 237 38.0
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.3e-31 141.4 137 48.2
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 8.3e-26 122.1 112 47.3
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.5e-22 109.4 68 76.5
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 4.0e-20 103.2 58 93.1
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.2e-20 102.8 82 56.1
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 7.0e-17 92.4 58 74.1
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.5e-08 63.5 38 78.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 2.3e-07 60.8 72 44.4


User provided reference genes

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