Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.5e-83 312.0 148 100.0
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.2e-75 285.0 148 93.2
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.6e-72 275.4 148 91.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.2e-71 272.3 148 89.9
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 2.8e-71 271.9 148 89.2
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.8e-71 271.9 148 89.9
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 3.7e-71 271.6 148 89.2
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 5.0e-68 261.2 148 87.2
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 5.0e-68 261.2 148 87.2
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 6.5e-68 260.8 148 86.5
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.9e-67 259.2 148 85.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.2e-66 256.5 149 86.6
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.7e-66 255.4 148 85.1
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 4.7e-66 254.6 148 84.5
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-65 252.7 148 83.8
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.2e-65 251.1 148 83.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 9.7e-64 246.9 148 81.1
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.2e-63 245.7 148 81.1
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 2.8e-63 245.4 150 80.0
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-62 243.0 150 79.3
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 9.1e-62 240.4 148 78.4
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.2e-61 240.0 148 78.4
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 5.9e-61 237.7 148 77.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.9e-61 237.7 154 74.7
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 7.7e-61 237.3 148 77.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.0e-60 236.9 154 74.0
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.3e-60 236.5 148 76.4
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.7e-60 236.1 125 84.8
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.2e-60 235.7 118 90.7
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.2e-60 235.7 148 77.7
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.9e-60 235.3 142 80.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.9e-60 235.3 136 80.1
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.9e-60 235.3 143 79.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 2.9e-60 235.3 149 78.5
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.0e-60 234.6 147 76.9
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.0e-60 234.6 118 89.8
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 6.5e-60 234.2 146 76.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 8.5e-60 233.8 142 80.3
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.1e-59 233.4 123 84.6
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 78.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.1e-59 233.4 127 86.6
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.5e-59 233.0 148 75.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.9e-59 232.6 148 76.4
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.9e-59 232.6 120 86.7
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.9e-59 232.6 151 75.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.2e-59 231.9 142 79.6
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.2e-59 231.9 141 79.4
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.5e-59 231.1 138 77.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 7.2e-59 230.7 148 75.0
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.2e-58 229.9 123 84.6
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.2e-58 229.9 118 88.1
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.2e-58 229.9 118 88.1
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 75.0
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 142 78.9
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.6e-58 229.6 142 78.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.7e-58 228.8 148 74.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 2.7e-58 228.8 144 77.1
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.6e-58 228.4 147 76.9
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 3.6e-58 228.4 133 82.7
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 4.7e-58 228.0 124 83.9
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.0e-58 227.3 148 73.0
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.0e-58 227.3 116 87.9
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.0e-57 226.9 133 81.2
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.0e-57 226.9 124 84.7
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.0e-57 226.9 143 75.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.0e-57 226.9 148 73.0
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.0e-57 226.9 148 72.3
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.8e-57 226.1 128 83.6
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.8e-57 226.1 136 77.9
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.3e-57 225.7 133 80.5
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 2.3e-57 225.7 136 77.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.0e-57 225.3 123 81.3
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.0e-57 225.3 112 88.4
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.0e-57 225.3 112 88.4
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 4.0e-57 224.9 136 77.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 6.7e-57 224.2 128 81.2
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 8.8e-57 223.8 148 74.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 8.8e-57 223.8 148 73.6
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.2e-56 223.4 148 72.3
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.5e-56 223.0 122 83.6
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.5e-56 223.0 124 83.1
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.5e-56 223.0 149 72.5
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.0e-56 222.6 118 86.4
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.0e-56 222.6 116 85.3
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 4.4e-56 221.5 123 81.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.3e-55 219.9 149 71.8
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.3e-55 219.9 118 83.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 4.8e-55 218.0 131 79.4
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 8.2e-55 217.2 147 72.8
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.4e-54 216.5 139 73.4
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.4e-54 216.5 133 77.4
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.1e-54 214.9 135 76.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.1e-54 214.9 135 76.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.1e-54 214.9 135 76.3
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 5.3e-54 214.5 112 84.8
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 5.3e-54 214.5 131 76.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.6e-53 213.0 126 79.4
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.0e-52 210.3 114 83.3
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.0e-52 210.3 111 85.6
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.0e-52 210.3 164 64.6
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.2e-52 209.1 152 65.1
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.2e-52 209.1 152 65.1
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.9e-52 208.8 115 80.9
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.8e-52 208.4 107 86.0
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 8.5e-52 207.2 107 85.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.1e-51 206.8 116 79.3
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.5e-51 206.5 111 85.6
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.9e-51 206.1 105 88.6
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.9e-51 206.1 111 81.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.1e-50 202.6 122 73.0
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.1e-50 202.6 118 76.3
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 4.7e-50 201.4 113 86.7
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.0e-49 200.3 149 65.8
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.4e-48 194.9 104 81.7
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-47 193.4 104 80.8
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.3e-47 191.0 148 64.2
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.8e-46 189.5 126 68.3
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.0e-44 183.7 153 63.4
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.1e-43 180.3 113 78.8
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.9e-43 179.5 145 63.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 9.5e-43 177.2 91 82.4
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-42 176.4 149 61.1
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 2.8e-42 175.6 144 63.9
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.3e-39 166.8 112 72.3
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 2.4e-38 162.5 89 84.3
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 4.5e-37 158.3 129 63.6
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 2.3e-36 156.0 78 83.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.1e-34 147.9 88 77.3
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-33 146.7 102 74.5
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 1.9e-30 136.3 73 80.8
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.0e-28 129.0 104 60.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.8e-26 122.5 88 73.9
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.1e-25 119.0 67 73.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.4e-22 109.4 62 74.2
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.7e-20 103.2 52 88.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 5.2e-17 91.7 43 83.7
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.3e-15 84.3 52 69.2
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.1e-14 81.3 50 82.0
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.6e-13 80.1 44 86.4
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 4.6e-13 78.6 42 85.7
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 7.3e-11 71.2 37 89.2
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.2e-10 68.2 40 70.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-09 67.4 49 63.3
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.9e-07 58.5 30 73.3


User provided reference genes

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