Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 7.5e-194 680.2 322 100.0
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 1.7e-158 562.8 293 88.4
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 7.3e-157 557.4 295 87.8
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 2.6e-154 548.9 295 86.1
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 5.8e-154 547.7 299 86.0
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 5.8e-154 547.7 299 86.0
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 7.1e-152 540.8 295 85.4
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.4e-139 500.0 320 72.8
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 2.2e-137 492.7 299 79.6
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 6.9e-115 417.9 290 66.6
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 1.2e-114 417.2 292 65.8
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 2.0e-114 416.4 223 86.1
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 2.9e-113 412.5 215 88.4
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 9.4e-112 407.5 290 64.8
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 2.0e-109 399.8 288 63.2
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 7.4e-109 397.9 300 62.7
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 7.4e-109 397.9 289 62.6
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 1.7e-108 396.7 292 61.6
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 4.8e-108 395.2 290 63.8
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 1.1e-107 394.0 290 63.1
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 9.1e-107 391.0 291 63.6
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 9.1e-107 391.0 291 61.9
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 3.4e-106 389.0 291 63.6
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 5.0e-105 385.2 301 59.1
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 1.1e-104 384.0 287 59.6
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 1.1e-104 384.0 289 60.9
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 5.5e-104 381.7 292 61.3
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 9.4e-104 380.9 300 60.0
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 1.6e-103 380.2 288 63.2
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 6.1e-103 378.3 292 61.0
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 7.9e-103 377.9 288 59.4
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.0e-102 377.5 294 60.9
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 3.0e-102 375.9 273 61.2
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 6.7e-102 374.8 293 57.7
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 7.4e-101 371.3 288 58.0
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 6.3e-100 368.2 281 60.5
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.1e-99 367.5 303 58.1
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 1.4e-99 367.1 293 60.8
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 5.3e-99 365.2 286 58.0
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 1.6e-98 363.6 292 56.5
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 2.0e-98 363.2 281 60.5
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 2.0e-98 363.2 299 58.5
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 5.0e-97 358.6 276 60.1
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 3.2e-96 355.9 289 58.1
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 4.7e-95 352.1 288 57.6
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 6.1e-95 351.7 289 57.8
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 8.8e-94 347.8 289 56.1
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 1.7e-92 343.6 272 57.0
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 8.2e-92 341.3 286 58.4
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 1.4e-91 340.5 276 56.2
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 1.4e-91 340.5 297 52.9
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 2.4e-91 339.7 239 64.0
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 5.3e-91 338.6 248 59.7
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 3.5e-90 335.9 280 56.8
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 9.4e-88 327.8 282 53.9
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 1.6e-87 327.0 283 55.5
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 6.1e-87 325.1 240 60.8
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 2.0e-85 320.1 276 56.2
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 3.4e-85 319.3 292 50.3
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 3.1e-83 312.8 270 55.9
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.9e-80 303.5 323 48.6
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.5e-72 277.3 244 53.3
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 2.3e-70 270.0 294 47.3
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 6.8e-70 268.5 277 46.2
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 2.7e-66 256.5 224 54.9
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 1.2e-63 247.7 232 52.6
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 2.2e-60 236.9 288 45.1
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 3.2e-59 233.0 368 36.1
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 9.2e-59 231.5 186 55.9
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 2.7e-58 229.9 313 38.3
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 2.5e-56 223.4 282 39.0
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 1.8e-54 217.2 314 36.3
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 6.8e-54 215.3 244 46.3
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 1.2e-45 188.0 231 42.4
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 3.4e-37 159.8 127 59.8
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 1.1e-32 144.8 110 62.7
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 4.8e-31 139.4 109 58.7
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 6.9e-30 135.6 369 26.3
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 9.9e-29 131.7 70 85.7
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 3.2e-19 100.1 185 37.3
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 5.3e-14 82.8 59 61.0


User provided reference genes

Program Settings