Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 6.9e-309 1063.1 543 100.0
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 8.0e-289 996.5 543 94.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.1e-281 971.8 544 91.4
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.9e-266 922.2 548 86.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.8e-264 913.7 543 86.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.8e-262 908.3 544 85.3
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 5.9e-260 900.6 542 84.7
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 5.0e-259 897.5 544 84.7
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 6.1e-257 890.6 547 83.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 7.0e-253 877.1 545 82.6
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.0e-251 870.9 483 90.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.6e-251 870.5 544 82.9
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 9.5e-250 866.7 479 90.2
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 9.5e-250 866.7 479 90.2
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 9.5e-250 866.7 544 82.5
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.6e-249 865.9 549 81.2
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 5.2e-248 860.9 544 83.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 5.2e-248 860.9 479 89.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-247 859.4 479 89.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.0e-247 859.0 479 89.8
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.4e-221 771.2 539 71.6
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.9e-219 765.0 535 72.0
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.9e-218 762.7 517 72.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 5.6e-218 761.1 492 76.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 3.6e-217 758.4 554 70.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 4.0e-216 755.0 477 76.5
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.0e-216 755.0 551 70.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.6e-215 750.7 551 70.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 9.9e-215 750.4 523 70.2
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.8e-214 748.4 551 68.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.4e-213 746.5 555 69.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.4e-213 746.5 475 76.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.4e-213 745.7 493 73.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.2e-213 745.3 558 68.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 4.2e-213 745.0 563 67.9
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 4.6e-212 741.5 560 68.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.8e-211 739.6 558 67.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 9.6e-210 733.8 558 67.6
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.7e-209 731.9 503 71.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.2e-209 731.1 560 66.8
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 4.0e-208 728.4 493 72.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.0e-208 728.4 506 70.8
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.0e-208 728.4 554 66.1
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.0e-207 726.1 497 70.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.0e-207 726.1 559 66.9
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.0e-206 723.8 492 73.4
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.0e-206 723.8 482 72.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 4.9e-206 721.5 478 74.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 8.4e-206 720.7 473 72.7
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.5e-205 719.2 559 67.1
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 9.3e-205 717.2 515 68.9
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.6e-204 716.5 513 68.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.1e-204 716.1 519 68.4
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.0e-203 713.8 476 72.1
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.3e-203 713.4 489 72.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.3e-203 713.4 466 73.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 6.7e-203 711.1 554 67.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 8.7e-203 710.7 547 66.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.3e-202 708.8 552 65.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.8e-201 705.7 568 63.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.8e-201 704.9 557 64.8
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.8e-201 704.9 554 67.9
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.2e-201 704.5 501 71.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.1e-200 703.7 538 66.0
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.4e-200 703.4 572 64.3
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 4.0e-200 701.8 563 64.3
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 5.3e-200 701.4 467 72.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 9.0e-200 700.7 548 64.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.2e-199 700.3 582 63.6
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.2e-199 700.3 476 71.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.6e-199 699.1 562 64.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.0e-198 694.9 554 65.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-197 693.0 542 65.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.2e-197 691.8 491 71.5
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-196 689.9 547 64.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.9e-196 687.6 463 71.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.0e-195 687.2 487 69.8
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.3e-195 686.8 572 62.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.9e-194 682.9 621 61.5
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-194 682.2 515 66.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.4e-194 681.0 515 66.6
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.6e-193 679.9 563 64.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.8e-193 678.3 515 66.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.2e-193 677.6 459 72.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 8.2e-193 677.6 592 60.6
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 8.2e-193 677.6 512 64.3
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.4e-192 676.8 473 69.8
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.8e-192 676.4 473 70.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.1e-192 675.6 501 67.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.9e-192 674.5 561 63.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.5e-191 673.3 552 64.5
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.4e-191 672.2 462 68.8
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.7e-190 669.8 570 61.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.9e-190 669.1 490 67.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 5.0e-190 668.3 553 64.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-190 668.3 548 64.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.0e-190 668.3 553 65.1
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 6.5e-190 667.9 551 61.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.9e-189 666.4 458 71.0
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.2e-189 665.6 490 67.6
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 9.4e-189 664.1 545 62.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.7e-188 662.5 481 68.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.0e-187 659.1 508 65.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 3.9e-187 658.7 545 61.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.7e-187 657.9 548 61.3
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-185 652.9 515 64.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-184 649.8 474 67.5
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-183 647.1 548 63.1
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.1e-180 636.3 692 52.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.3e-179 632.9 473 66.6
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-177 626.7 544 60.3
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.7e-174 616.7 565 61.2
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.6e-172 609.0 462 63.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.2e-169 599.7 607 56.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 7.2e-165 584.7 554 58.8
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.0e-163 579.3 363 77.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-161 572.8 366 75.7
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.0e-158 564.3 390 71.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.1e-152 544.3 462 59.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 3.5e-151 539.3 552 53.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.7e-150 537.0 467 57.0
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.7e-145 519.2 361 71.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.4e-144 516.5 493 57.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.6e-143 512.3 461 56.6
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-139 500.0 522 51.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.9e-136 490.3 326 73.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.4e-136 490.0 361 69.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 3.0e-134 483.0 381 66.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.2e-127 461.1 396 61.9
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.6e-119 432.6 289 70.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.5e-111 406.4 472 47.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.9e-109 400.6 482 46.7
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 7.3e-109 398.7 365 60.0
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 9.9e-106 388.3 281 66.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.2e-104 383.3 243 75.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 7.1e-96 355.5 215 79.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-94 351.3 219 75.3
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.7e-94 348.6 216 77.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.3e-92 344.7 305 61.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 6.9e-91 339.0 234 72.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.6e-90 337.0 273 63.7
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 5.5e-88 329.3 275 59.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.9e-87 325.5 458 40.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.9e-80 304.3 320 52.2
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-77 295.0 198 70.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 7.4e-77 292.4 468 36.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.2e-76 288.9 185 77.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.3e-75 286.2 271 52.0
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 6.9e-67 259.2 199 66.8
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.4e-62 245.0 282 50.0
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.9e-62 243.4 490 34.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.5e-58 230.3 184 65.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.4e-54 218.4 171 60.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.1e-51 206.8 277 45.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 9.4e-48 195.7 139 69.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 5.2e-46 189.9 104 86.5
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-45 186.8 155 65.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-43 181.8 328 40.9
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.1e-43 180.3 114 74.6
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.3e-41 175.3 324 39.5
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-41 174.9 125 63.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.5e-40 171.0 124 66.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.8e-38 164.9 137 56.2
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 4.0e-30 137.1 88 72.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.8e-29 132.5 80 75.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 9.8e-29 132.5 88 69.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.9e-28 130.2 76 77.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.4e-28 129.8 77 83.1
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 9.2e-27 125.9 182 42.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.7e-26 124.4 102 63.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.6e-23 114.0 64 81.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-22 111.3 61 83.6
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 5.2e-22 110.2 94 55.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.4e-21 107.1 64 75.0
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 7.5e-21 106.3 103 63.1
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-20 105.5 84 59.5
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.7e-20 105.1 83 63.9
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 7.0e-19 99.8 78 52.6
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.9e-17 94.0 80 58.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.3e-16 90.5 62 64.5
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 7.3e-16 89.7 64 59.4
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 1.4e-14 85.5 48 83.3
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.8e-13 79.3 164 37.2
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.1e-11 73.9 112 43.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 5.4e-11 73.6 48 75.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 7.1e-11 73.2 51 62.7
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-07 62.4 155 34.2


User provided reference genes

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