Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 0.0e+00 1221.8 1038 100.0
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 1.2e-296 1023.5 996 87.2
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.5e-272 943.3 1038 83.6
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 4.6e-269 931.8 1038 83.7
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 1.9e-254 883.2 1041 82.8
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 1.5e-251 873.6 769 88.9
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 2.5e-251 872.8 770 89.0
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 2.5e-251 872.8 775 88.5
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 3.8e-231 805.8 768 78.8
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 6.1e-213 745.3 777 80.4
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 2.8e-165 587.0 833 83.6
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.2e-146 524.2 813 63.2
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 6.0e-144 516.2 778 67.4
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 2.3e-143 514.2 752 61.8
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.5e-142 511.5 775 67.5
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.6e-141 508.1 722 61.4
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.5e-139 501.5 766 67.0
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 2.0e-139 501.1 739 62.8
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 2.0e-139 501.1 760 61.7
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 1.3e-138 498.4 763 61.7
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 3.8e-138 496.9 759 59.7
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 8.4e-138 495.7 770 67.4
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 2.7e-136 490.7 727 65.6
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 2.7e-136 490.7 751 65.6
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 1.0e-135 488.8 744 69.0
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 2.3e-135 487.6 757 67.8
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 5.7e-134 483.0 755 58.4
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 7.4e-134 482.6 762 62.6
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 3.7e-133 480.3 757 61.6
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.8e-132 478.0 751 60.7
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 4.1e-132 476.9 759 67.6
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 5.3e-132 476.5 750 61.3
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 6.9e-132 476.1 739 65.1
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 1.5e-131 474.9 750 61.2
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 1.3e-130 471.9 761 65.7
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 2.5e-129 467.6 712 67.1
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 7.1e-129 466.1 750 60.8
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 9.3e-129 465.7 759 64.0
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 5.1e-127 459.9 757 56.8
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 1.3e-125 455.3 533 76.9
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 3.7e-125 453.8 742 60.0
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 6.3e-125 453.0 709 55.6
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.2e-123 448.7 765 58.0
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 2.5e-121 441.0 771 61.0
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 4.2e-121 440.3 768 62.8
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 9.4e-121 439.1 734 58.4
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 5.7e-118 429.9 770 59.6
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 5.7e-118 429.9 779 57.9
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 9.7e-118 429.1 768 59.9
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.2e-117 427.9 765 59.0
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 1.1e-116 425.6 708 67.1
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 1.8e-116 424.9 741 57.9
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 5.9e-115 419.9 743 60.4
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 7.7e-115 419.5 770 57.1
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 2.2e-114 417.9 746 58.3
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.9e-114 417.5 798 55.4
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.7e-112 410.2 797 55.5
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 6.1e-112 409.8 847 57.7
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 5.1e-111 406.8 737 48.6
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 8.8e-111 406.0 731 59.5
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 1.1e-110 405.6 783 58.5
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 7.4e-110 402.9 768 62.0
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 1.1e-108 399.1 794 59.1
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.8e-108 398.3 790 62.5
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.7e-106 391.7 755 61.7
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 2.2e-106 391.3 754 59.4
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.2e-106 391.3 776 62.2
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 3.8e-106 390.6 779 56.7
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 8.5e-106 389.4 748 62.8
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.1e-105 389.0 780 58.8
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.2e-105 386.3 774 62.1
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.2e-104 385.6 738 58.0
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 3.0e-103 380.9 748 63.2
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 5.7e-102 376.7 710 62.8
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 9.7e-102 375.9 1060 51.7
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.6e-99 368.6 771 53.7
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 2.0e-99 368.2 749 62.2
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.9e-99 366.7 752 60.9
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.2e-98 364.8 731 62.4
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 2.2e-98 364.8 752 58.9
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 6.3e-93 346.7 753 62.0
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 6.3e-93 346.7 649 68.1
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 4.0e-87 327.4 759 59.3
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 9.1e-84 316.2 230 68.3
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 7.5e-78 296.6 735 56.9
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.6e-72 278.9 169 80.5
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 2.3e-71 275.0 743 55.7
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 4.0e-71 274.2 184 77.7
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.2e-69 268.5 204 66.7
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 8.9e-63 246.5 539 65.7
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 2.7e-59 235.0 541 58.8
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.5e-57 229.2 259 49.4
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 6.6e-50 203.8 227 50.7
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 1.9e-49 202.2 543 54.1
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.4e-47 196.1 261 42.5
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 2.1e-40 172.2 225 42.7
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 2.1e-32 145.6 216 40.3
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 1.1e-31 143.3 579 49.6
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 2.6e-30 138.7 83 78.3
BcaNung04357 Brassica carinata HOM05D006877 ORTHO05D000761 1.9e-28 132.5 77 85.7
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 4.9e-21 107.8 95 56.8
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 7.1e-20 104.0 84 56.0
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 4.3e-17 94.7 51 86.3
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 2.1e-16 92.4 83 51.8
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 3.0e-10 72.0 118 33.9
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.1e-09 70.1 121 33.1
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.5e-09 69.7 79 46.8
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.5e-09 69.7 113 34.5
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 2.5e-09 68.9 133 27.8
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 3.3e-09 68.6 140 30.0
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 7.4e-09 67.4 124 30.6
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 9.7e-09 67.0 115 30.4
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 1.3e-08 66.6 91 41.8
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.2e-08 65.9 118 31.4
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 2.2e-08 65.9 118 32.2
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 3.7e-08 65.1 116 32.8
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 8.2e-08 63.9 127 26.8
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 8.2e-08 63.9 118 33.1
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 8.2e-08 63.9 114 31.6
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.1e-07 63.5 109 33.0
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.1e-07 63.5 155 29.0
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 1.1e-07 63.5 107 34.6
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 1.4e-07 63.2 118 32.2
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.4e-07 63.2 109 28.4
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 1.4e-07 63.2 114 31.6
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 1.8e-07 62.8 170 25.9
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 3.1e-07 62.0 236 23.7
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 3.1e-07 62.0 107 33.6
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 4.1e-07 61.6 92 34.8
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 4.1e-07 61.6 101 33.7
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 4.1e-07 61.6 113 30.1
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 4.1e-07 61.6 113 30.1
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 5.3e-07 61.2 133 27.8
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.3e-07 61.2 133 27.8
Sed0011590 Sechium edule HOM05D002479 ORTHO05D002675 5.3e-07 61.2 114 32.5
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 6.9e-07 60.8 148 27.0
ECA246G4149 Erigeron canadensis HOM05D002479 ORTHO05D002675 6.9e-07 60.8 114 30.7
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 6.9e-07 60.8 133 27.8
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 6.9e-07 60.8 133 27.8
Sp3g20700 Schrenkiella parvula HOM05D002479 ORTHO05D002675 6.9e-07 60.8 131 26.0
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 6.9e-07 60.8 113 30.1
COL.COLO4_05230 Corchorus olitorius HOM05D006877 ORTHO05D008735 9.0e-07 60.5 39 64.1
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 1.2e-06 60.1 109 25.7
CBR_g22948 Chara braunii HOM05D002479 ORTHO05D002675 1.2e-06 60.1 126 28.6
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 1.2e-06 60.1 109 25.7
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 133 27.1
Lsat_1_v5_gn_3_20980 Lactuca sativa HOM05D000001 ORTHO05D000003 1.2e-06 60.1 286 20.6
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 1.2e-06 60.1 114 30.7
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.2e-06 60.1 133 30.1
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.5e-06 59.7 118 28.8
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 1.5e-06 59.7 114 30.7
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.5e-06 59.7 115 29.6
Peaxi162Scf00788g00034 Petunia axillaris HOM05D002479 ORTHO05D002675 1.5e-06 59.7 113 27.4
GSVIVG01000244001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.5e-06 59.7 287 25.1
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 2.0e-06 59.3 85 35.3
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 2.0e-06 59.3 109 25.7
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 2.0e-06 59.3 118 32.2
Gohir.A09G221700 Gossypium hirsutum HOM05D002479 ORTHO05D002675 2.0e-06 59.3 101 30.7
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 2.0e-06 59.3 101 30.7
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 2.0e-06 59.3 101 30.7
Lj1g0004355 Lotus japonicus HOM05D000001 ORTHO05D000003 2.0e-06 59.3 281 25.3
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 2.0e-06 59.3 125 28.8
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.0e-06 59.3 115 29.6
AagrBONN_evm.TU.Sc2ySwM_362.2765 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-06 58.9 290 21.4
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 2.6e-06 58.9 97 28.9
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 2.6e-06 58.9 109 25.7
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.6e-06 58.9 116 27.6
Migut.H01034 Erythranthe guttata HOM05D002479 ORTHO05D002675 3.4e-06 58.5 109 32.1
AT1G73710 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 4.5e-06 58.2 116 30.2
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 4.5e-06 58.2 148 26.4
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 4.5e-06 58.2 116 31.0
Carub.0003s2318 Capsella rubella HOM05D002479 ORTHO05D002675 5.9e-06 57.8 97 27.8
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 5.9e-06 57.8 133 27.8
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 5.9e-06 57.8 133 27.1
Nitab4.5_0007585g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 5.9e-06 57.8 116 27.6
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 5.9e-06 57.8 133 27.1
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 5.9e-06 57.8 93 35.5
AL2G33510 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 7.7e-06 57.4 116 30.2
CAN.G749.33 Capsicum annuum HOM05D002479 ORTHO05D002675 7.7e-06 57.4 100 30.0


User provided reference genes

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