Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.6e-216 754.2 366 100.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.4e-191 672.9 387 86.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.6e-187 659.4 387 83.7
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.9e-186 655.2 387 83.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 4.0e-183 644.8 387 82.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.5e-182 642.9 392 81.1
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-182 642.5 391 81.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.4e-180 635.6 387 81.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-176 622.9 393 79.6
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.6e-176 621.7 393 79.4
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-175 618.6 392 79.8
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-175 618.6 392 79.8
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.0e-175 618.6 392 79.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.9e-171 604.4 393 76.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.2e-169 597.4 393 75.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.2e-167 591.3 391 75.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 6.8e-167 590.9 395 73.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-167 590.9 391 75.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.9e-167 590.5 395 73.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-165 586.6 391 74.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.7e-165 585.1 391 73.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.7e-165 585.1 391 73.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-164 583.6 385 75.3
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.1e-164 583.6 374 75.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 9.2e-164 580.5 386 74.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.3e-162 575.9 381 74.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 5.0e-162 574.7 387 73.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 4.3e-161 571.6 386 73.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-159 566.6 381 74.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-159 566.2 406 70.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.5e-145 520.0 404 63.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.3e-143 512.7 400 61.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.2e-143 511.5 403 60.8
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 8.9e-143 510.8 386 63.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.2e-142 510.4 402 62.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-142 509.6 404 61.6
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 4.4e-142 508.4 402 63.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.4e-142 508.4 407 61.7
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 9.9e-142 507.3 406 60.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.3e-141 506.9 404 61.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.3e-141 506.9 404 61.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-141 506.5 396 61.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.2e-141 506.1 402 61.4
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.2e-141 506.1 403 61.0
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.9e-141 505.8 398 61.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 8.4e-141 504.2 402 61.7
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-140 503.8 404 60.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-140 503.1 403 60.5
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.4e-140 502.7 403 61.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.1e-140 501.9 404 60.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 4.1e-140 501.9 403 61.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 5.4e-140 501.5 402 61.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.1e-140 501.1 402 60.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.2e-139 500.4 386 62.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.2e-139 500.4 396 60.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.1e-139 499.6 399 62.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.7e-139 499.2 383 62.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.7e-139 499.2 402 60.9
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 4.6e-139 498.4 402 60.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.6e-139 498.4 401 59.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.7e-138 496.5 409 59.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.7e-138 496.5 404 60.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.3e-138 496.1 404 60.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.9e-138 495.4 400 60.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 8.6e-138 494.2 404 59.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.3e-137 492.3 402 59.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 7.3e-137 491.1 402 59.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.2e-136 490.3 401 58.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.6e-136 490.0 400 59.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.6e-136 490.0 400 59.5
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.6e-136 490.0 403 58.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.1e-136 489.6 404 59.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.1e-136 489.6 406 59.4
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.8e-136 489.2 402 58.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.6e-136 488.8 398 60.6
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.7e-136 488.4 405 60.2
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.2e-136 488.0 383 61.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.2e-136 488.0 410 60.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.4e-135 486.9 403 58.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-135 486.5 383 60.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.4e-135 486.1 405 60.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-134 483.8 413 57.6
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.5e-134 483.4 394 59.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.4e-134 482.3 394 59.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 4.2e-132 475.3 397 59.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.4e-132 474.9 394 58.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 9.3e-132 474.2 386 60.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.8e-131 471.1 406 58.1
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 5.1e-130 468.4 395 58.7
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 8.7e-130 467.6 401 56.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.7e-130 467.6 406 56.9
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.5e-129 466.8 406 56.4
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.3e-129 465.7 402 58.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 5.6e-129 464.9 393 57.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.8e-128 462.6 407 59.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.8e-128 462.6 286 78.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.2e-128 461.5 409 58.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.2e-128 461.5 407 59.2
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 6.2e-128 461.5 415 56.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.4e-127 460.3 399 58.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.4e-127 460.3 404 56.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 4.0e-127 458.8 472 51.3
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.3e-127 458.4 406 58.1
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 5.3e-127 458.4 353 62.3
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.0e-127 457.6 398 57.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.2e-126 457.2 404 55.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.5e-126 456.8 434 53.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-126 456.1 390 59.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 9.9e-126 454.1 430 55.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.3e-125 453.8 435 52.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-125 453.4 402 56.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.2e-125 453.0 398 57.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.4e-125 451.4 403 54.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 8.4e-125 451.1 435 52.9
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.1e-124 450.7 395 55.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.9e-124 449.9 389 55.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.9e-124 449.9 390 57.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.9e-124 449.9 435 52.6
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.6e-123 446.8 403 58.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.7e-123 446.0 416 55.3
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.5e-123 445.7 399 55.4
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.3e-122 443.7 405 54.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.3e-122 443.0 360 58.3
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.1e-121 440.7 356 60.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.0e-119 432.2 377 56.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.3e-119 431.8 400 54.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.3e-119 431.8 448 50.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.6e-118 429.5 400 53.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.9e-117 426.0 390 54.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.2e-116 422.2 378 54.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.2e-116 422.2 384 53.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 5.5e-116 421.8 317 64.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.6e-115 418.7 388 52.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.6e-115 418.7 409 53.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.3e-113 412.5 475 47.6
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.3e-113 412.1 393 52.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.0e-111 405.6 360 54.7
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.0e-110 403.3 291 63.2
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.1e-107 393.3 287 65.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.6e-107 392.1 388 49.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 6.7e-106 388.3 526 39.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.1e-104 383.3 287 63.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.7e-104 382.5 396 48.7
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.7e-104 382.5 289 63.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.0e-101 372.1 290 62.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.4e-94 349.4 364 49.7
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-89 331.6 203 78.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-77 293.1 218 64.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 6.3e-72 275.4 248 56.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.2e-68 262.7 266 47.7
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.7e-61 240.7 311 43.1
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.6e-53 211.8 395 37.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.6e-52 209.1 218 50.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-50 203.4 163 58.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.9e-48 196.8 194 50.5
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-47 194.5 303 38.0
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.6e-45 185.7 196 48.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.1e-42 176.8 366 32.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-41 174.9 203 52.2
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-38 164.1 120 67.5
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.1e-35 154.1 261 37.2
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 9.5e-28 128.6 275 32.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.8e-26 124.4 91 60.4
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.2e-24 117.5 117 50.4
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.8e-24 116.7 216 32.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-23 115.2 133 47.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-23 114.0 121 52.1
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.9e-16 89.7 97 50.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.1e-11 74.3 310 26.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.4e-10 71.6 82 46.3
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.9e-10 69.3 45 64.4
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.5e-09 66.6 63 54.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.7e-06 57.4 74 43.2


User provided reference genes

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