Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-152 543.1 283 100.0
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.8e-149 531.6 283 96.1
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.3e-145 518.5 283 93.3
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 4.3e-145 518.1 283 92.9
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 9.6e-145 516.9 283 93.3
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.8e-144 515.4 281 91.8
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 3.7e-144 515.0 283 92.9
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 7.6e-142 507.3 283 90.8
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 3.9e-138 495.0 325 79.7
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 3.9e-138 495.0 281 89.7
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 8.7e-138 493.8 283 88.3
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.5e-137 492.3 272 93.8
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.4e-135 485.7 286 87.4
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 2.0e-134 482.6 286 86.7
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.0e-134 482.6 286 87.1
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.0e-133 480.3 286 86.0
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.9e-133 478.8 286 85.7
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.5e-133 477.6 286 85.7
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 6.5e-133 477.6 286 86.4
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.4e-132 476.5 286 86.0
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.5e-132 475.7 286 85.7
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.5e-132 475.7 286 86.0
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.6e-131 473.0 272 91.2
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 2.7e-131 472.2 286 85.3
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 6.1e-131 471.1 282 87.6
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 6.1e-131 471.1 282 87.6
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 3.9e-130 468.4 286 84.6
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 4.3e-129 464.9 250 94.4
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 6.9e-127 457.6 276 84.4
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.2e-126 456.8 276 88.4
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.5e-126 454.9 283 78.8
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 4.5e-126 454.9 283 78.8
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.9e-126 454.5 283 78.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 3.8e-125 451.8 283 78.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.5e-125 451.1 283 79.9
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 8.5e-125 450.7 283 78.8
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.1e-124 450.3 282 79.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.1e-124 450.3 283 79.2
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.9e-124 449.5 283 79.2
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.9e-124 449.5 283 78.8
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 2.5e-124 449.1 283 78.4
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.2e-124 448.7 283 79.5
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 7.2e-124 447.6 281 78.3
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 9.4e-124 447.2 283 77.4
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 9.4e-124 447.2 283 78.1
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.2e-123 446.8 281 78.6
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.6e-123 446.4 283 78.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.1e-123 446.0 283 77.0
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.8e-122 443.0 283 77.4
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.1e-121 440.3 283 77.0
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.5e-121 439.9 283 77.4
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.6e-121 439.1 283 77.4
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 2.6e-121 439.1 283 77.4
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 2.6e-121 439.1 283 77.4
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 7.4e-121 437.6 283 77.0
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 9.7e-121 437.2 283 77.4
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.7e-120 436.4 283 75.6
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.2e-120 436.0 283 77.7
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 2.2e-120 436.0 283 74.6
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 3.7e-120 435.3 283 75.6
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 4.8e-120 434.9 283 76.3
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 4.8e-120 434.9 283 75.6
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 6.3e-120 434.5 283 74.6
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 6.3e-120 434.5 283 75.6
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 8.2e-120 434.1 283 75.3
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 1.1e-119 433.7 283 75.3
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.1e-119 433.7 282 76.2
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.8e-119 433.0 283 74.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.1e-119 432.2 283 75.3
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 3.1e-119 432.2 283 75.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 4.1e-119 431.8 283 75.3
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.2e-118 430.3 283 74.2
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 2.6e-118 429.1 283 74.6
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.5e-118 428.3 283 73.1
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 4.5e-118 428.3 283 74.9
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 5.9e-118 427.9 294 73.1
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.0e-117 427.2 283 73.1
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.0e-117 427.2 283 73.1
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.9e-117 425.6 283 75.3
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.8e-117 425.2 283 73.9
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 5.0e-117 424.9 341 65.7
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 5.0e-117 424.9 283 73.1
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 8.5e-117 424.1 283 74.6
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.4e-116 423.3 270 75.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.4e-116 423.3 283 72.4
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.4e-116 423.3 286 73.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.5e-116 422.5 285 73.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.2e-116 422.2 283 74.2
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.2e-116 421.8 278 76.3
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 9.4e-116 420.6 283 75.6
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.2e-115 420.2 283 75.6
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 2.7e-115 419.1 283 73.5
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 8.0e-115 417.5 283 73.1
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.8e-114 416.4 283 72.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 2.0e-113 412.9 283 71.7
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.6e-113 412.5 283 72.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.4e-113 411.8 283 72.4
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 1.4e-111 406.8 283 70.3
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 3.1e-111 405.6 283 72.1
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.1e-111 405.2 279 71.3
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 4.1e-111 405.2 267 76.4
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.3e-111 404.8 289 70.2
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 7.0e-111 404.4 317 64.4
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.2e-110 403.7 284 71.1
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.2e-110 403.7 291 69.1
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.6e-110 403.3 286 72.4
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 7.7e-110 401.0 283 70.7
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.9e-109 399.1 283 71.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.1e-108 397.1 283 71.4
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.5e-108 396.7 283 68.9
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 5.5e-108 394.8 267 71.2
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 5.5e-108 394.8 267 74.5
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.6e-107 393.3 283 68.2
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.7e-107 392.5 249 84.7
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.8e-106 389.8 283 66.4
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.8e-106 389.8 283 66.4
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 5.2e-106 388.3 241 80.1
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 8.8e-106 387.5 287 65.9
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 8.8e-106 387.5 267 71.9
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 2.6e-105 386.0 248 75.0
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 4.4e-105 385.2 296 66.9
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.7e-105 384.8 280 68.6
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 7.5e-105 384.4 267 70.4
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 5.3e-103 378.3 314 61.5
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 4.5e-102 375.2 283 69.3
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.9e-102 374.8 268 68.7
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.5e-100 370.2 284 66.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.9e-100 369.8 283 66.8
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.1e-99 366.3 287 62.7
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 8.0e-99 364.4 288 64.9
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.0e-98 364.0 282 64.5
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.8e-96 355.9 281 71.9
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 8.3e-96 354.4 283 65.7
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 7.0e-95 351.3 284 61.3
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.7e-94 347.8 307 58.6
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 2.3e-93 346.3 214 79.4
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.2e-92 342.0 341 57.5
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.2e-92 342.0 267 62.5
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 5.5e-92 341.7 284 63.7
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 5.5e-92 341.7 232 71.6
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.6e-91 340.1 257 68.9
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.5e-89 333.6 224 73.2
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 9.8e-89 330.9 214 73.4
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.1e-87 325.5 280 60.7
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 6.1e-83 311.6 268 59.7
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 4.6e-78 295.4 284 55.3
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 4.9e-72 275.4 241 61.8
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.1e-70 270.0 214 60.7
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 3.9e-61 239.2 270 54.8
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-50 204.1 281 47.7
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 6.9e-50 201.8 173 62.4
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-48 197.6 212 57.1
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.7e-48 197.2 174 57.5
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.9e-47 193.7 328 42.1
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.9e-47 193.7 174 58.0
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.0e-45 188.0 121 71.1
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 9.9e-41 171.4 123 71.5
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-34 151.4 188 46.3
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.3e-28 129.8 287 38.0
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.6e-25 120.2 220 31.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 5.8e-25 119.0 279 36.6
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.0e-24 118.2 85 63.5
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.7e-20 102.4 121 43.8
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.8e-18 97.4 91 53.8
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.2e-17 94.7 66 72.7
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.6e-17 93.6 176 36.9
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.0e-16 89.4 175 34.9
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.6e-14 83.2 52 78.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-09 67.4 47 70.2


User provided reference genes

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