Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000715m.g Eutrema salsugineum HOM05D000002 ORTHO05D000001 9.4e-36 152.9 73 100.0
Thhalv10000703m.g Eutrema salsugineum HOM05D000002 ORTHO05D000001 8.5e-29 129.8 71 84.5
TAR540G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.3e-12 74.7 73 49.3
TAR491G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.2e-11 72.8 65 52.3
TAR416G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.8e-11 71.6 71 50.7
RcHm_v2.0_Chr2g0143411 Rosa chinensis HOM05D000002 ORTHO05D000001 4.7e-11 70.9 73 49.3
RcHm_v2.0_Chr3g0448581 Rosa chinensis HOM05D000015 ORTHO05D000734 4.7e-11 70.9 73 49.3
SEGI_30649 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.3e-10 68.6 73 43.8
TAR588G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.3e-10 68.6 70 47.1
Sopen10g024120 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-10 68.2 69 44.9
SHI35369 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-10 67.8 67 44.8
Sopen05g019080 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-10 67.8 69 46.4
TAR451G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.0e-10 67.8 65 46.2
FvH4_6g43142 Fragaria vesca HOM05D000002 ORTHO05D000001 6.8e-10 67.0 61 49.2
Gorai.008G089200 Gossypium raimondii HOM05D000002 ORTHO05D000001 6.8e-10 67.0 64 40.6
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 8.9e-10 66.6 64 45.3
Sopen06g011320 Solanum pennellii HOM05D000002 ORTHO05D000001 8.9e-10 66.6 71 45.1
Sopen06g022150 Solanum pennellii HOM05D000002 ORTHO05D000001 8.9e-10 66.6 71 45.1
Sopen10g024060 Solanum pennellii HOM05D000002 ORTHO05D000001 8.9e-10 66.6 69 43.5
FvH4_4g14601 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-09 66.2 67 46.3
Sopen01g007390 Solanum pennellii HOM05D000004 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen01g028280 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen02g014940 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen02g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen04g006060 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen04g027340 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen05g028580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen06g003350 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen06g004200 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen06g004530 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen06g015850 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen06g024630 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen08g004660 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen09g006820 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen09g007410 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen09g007880 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen09g011980 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen09g032750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen10g022510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen10g023500 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen11g019960 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen12g004240 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
Sopen12g019380 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 69 44.9
CiPaw.15G040700 Carya illinoinensis HOM05D000002 ORTHO05D000001 2.0e-09 65.5 64 48.4
Potri.006G182801 Populus trichocarpa HOM05D000002 ORTHO05D000001 2.0e-09 65.5 64 48.4
Cc04_g14940 Coffea canephora HOM05D000002 ORTHO05D000001 2.6e-09 65.1 64 50.0
Sopen06g032140 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-09 65.1 69 44.9
SHI15220 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-09 64.7 64 45.3
Sopen01g028950 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-09 64.7 69 44.9
Atru.chr2.917 Acer truncatum HOM05D000002 ORTHO05D000001 4.4e-09 64.3 83 39.8
CiPaw.07G236500 Carya illinoinensis HOM05D000002 ORTHO05D000001 4.4e-09 64.3 64 48.4
Atru.chr3.3068 Acer truncatum HOM05D000002 ORTHO05D000001 9.8e-09 63.2 83 38.6
Sopen03g009200 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 62.8 67 44.8
Sopen03g023600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 62.8 69 42.0
Sopen10g024360 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 62.8 69 43.5
Sopen11g018860 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 62.8 67 44.8
TAR470G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-08 62.8 65 47.7
TAR710G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-08 62.8 62 50.0
Ca_20652_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.7e-08 62.4 68 42.6
Sopen06g016770 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 62.4 69 43.5
MBI14_g13279_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 2.2e-08 62.0 67 37.3
MD03G1286700 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-08 62.0 67 44.8
Sopen01g028760 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-08 62.0 69 43.5
Atru.chr10.707 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-08 61.6 83 38.6
Ca_14914_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.9e-08 61.6 68 42.6
Thhalv10029300m.g Eutrema salsugineum HOM05D000002 ORTHO05D000001 2.9e-08 61.6 36 77.8
Sopen04g031680 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-08 61.6 69 40.6
Sopen08g020030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-08 61.6 69 43.5
Ca_04609_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_05165_v3 Cicer arietinum L. HOM05D000130 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_06193_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_14017_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_17825_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_23427_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Ca_25466_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.7e-08 61.2 68 42.6
Sopen12g025240 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-08 61.2 69 43.5
Ca_09777_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.9e-08 60.8 68 42.6
CiPaw.16G104500 Carya illinoinensis HOM05D000002 ORTHO05D000001 6.4e-08 60.5 64 42.2
Sopen01g011330 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-08 60.5 69 40.6
CiPaw.01G068000 Carya illinoinensis HOM05D000002 ORTHO05D000001 8.3e-08 60.1 64 43.8
Sopen12g019360 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-08 60.1 69 42.0
Sopen04g013370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-07 59.7 61 45.9
Sopen10g012230 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-07 59.7 66 42.4
TAR687G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.1e-07 59.7 72 41.7
Ca_02050_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-07 59.3 68 41.2
Ca_04835_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-07 59.3 68 41.2
Ca_20010_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-07 59.3 68 41.2
Ca_27850_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-07 59.3 68 41.2
Sopen02g015650 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-07 59.3 69 43.5
Ca_06740_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.9e-07 58.9 68 44.1
SHI25666 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-07 58.9 56 46.4
Sopen01g028400 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g005190 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g010750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g019360 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g020330 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g035670 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen03g036790 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen04g035240 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen05g015480 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen06g024970 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen06g027290 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen07g015600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 44.3
Sopen07g025420 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen09g019320 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen09g031250 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen10g006220 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen10g012180 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen10g017430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
Sopen10g023760 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 58.9 61 45.9
FvH4_5g20321 Fragaria vesca HOM05D000002 ORTHO05D000001 2.4e-07 58.5 61 42.6
MD15G1021000 Malus domestica HOM05D000247 ORTHO05D000288 2.4e-07 58.5 61 45.9
Sopen01g012120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-07 58.5 61 44.3
Sopen05g027280 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-07 58.5 61 45.9
Sopen09g006870 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-07 58.5 69 42.0
CAN.G1562.3 Capsicum annuum HOM05D000154 ORTHO05D000092 3.2e-07 58.2 64 45.3
CiPaw.01G146300 Carya illinoinensis HOM05D000002 ORTHO05D000001 3.2e-07 58.2 64 43.8
FvH4_4g33602 Fragaria vesca HOM05D000002 ORTHO05D000001 3.2e-07 58.2 67 40.3
FvH4_5g07492 Fragaria vesca HOM05D000002 ORTHO05D000001 3.2e-07 58.2 67 40.3
Sopen09g012400 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-07 58.2 61 45.9
Ca_22465_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.4e-07 57.4 68 41.2
Solyc08g061847.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 5.4e-07 57.4 67 41.8
Sopen06g006450 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-07 57.0 61 44.3
Sopen03g009150 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-07 56.6 55 50.9
Ca_20284_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-06 56.2 68 41.2
Ca_23974_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-06 56.2 62 41.9
ECA236G3420 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.2e-06 56.2 61 44.3
Sopen01g030160 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-06 56.2 61 45.9
CSS0013274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-06 55.8 67 38.8
CAN.G514.8 Capsicum annuum HOM05D000002 ORTHO05D000001 1.6e-06 55.8 80 38.8
Lalb_Chr13g0294661 Lupinus albus HOM05D000002 ORTHO05D000001 1.6e-06 55.8 63 38.1
Sopen04g030970 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-06 55.8 61 44.3
Atru.chr2.3876 Acer truncatum HOM05D000015 ORTHO05D009751 2.0e-06 55.5 84 38.1
Ca_26751_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.0e-06 55.5 74 37.8
ECA238G0601 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 55.5 59 44.1
FvH4_3g08580 Fragaria vesca HOM05D000002 ORTHO05D000001 2.0e-06 55.5 61 39.3
Sopen05g013940 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-06 55.5 61 44.3
CSS0016288 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-06 55.1 67 38.8
TPR.G18411 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-06 55.1 64 34.4
CAN.G313.13 Capsicum annuum HOM05D000092 ORTHO05D000001 3.5e-06 54.7 80 38.8
Lalb_Chr08g0237561 Lupinus albus HOM05D000002 ORTHO05D000001 3.5e-06 54.7 66 36.4
Pp3c14_15270 Physcomitrium patens HOM05D032568 ORTHO05D037337 3.5e-06 54.7 72 41.7
Sopen08g017400 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-06 54.7 67 40.3
Ca_09776_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.6e-06 54.3 68 39.7
Ca_26885_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.6e-06 54.3 65 40.0
Lalb_Chr04g0254181 Lupinus albus HOM05D000002 ORTHO05D000001 4.6e-06 54.3 63 39.7
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 6.0e-06 53.9 64 40.6
Ca_13642_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.0e-06 53.9 68 39.7
Sopen03g013160 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-06 53.9 49 49.0
Sopen11g024550 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-06 53.9 61 42.6
Sopen02g009760 Solanum pennellii HOM05D000002 ORTHO05D001218 7.8e-06 53.5 52 46.2


User provided reference genes

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