Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.8e-290 1000.7 483 100.0
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.7e-279 965.3 483 96.1
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 9.6e-278 959.5 483 95.4
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.1e-272 941.8 476 95.4
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.8e-269 931.4 476 92.4
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.8e-268 928.7 476 92.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 9.0e-268 926.4 476 92.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.1e-264 915.2 483 91.3
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 6.9e-260 900.2 482 88.8
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.5e-259 899.0 479 88.9
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.2e-258 895.2 475 89.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.4e-257 892.5 476 88.9
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.7e-256 888.3 478 88.7
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 7.9e-256 886.7 479 87.9
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.9e-256 886.7 478 88.3
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.0e-255 886.3 482 87.8
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.0e-255 886.3 482 87.8
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.8e-255 885.6 478 88.3
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 5.1e-255 884.0 474 88.2
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 9.7e-254 879.8 478 87.2
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.3e-253 879.4 476 87.0
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.8e-253 878.2 476 87.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 4.8e-253 877.5 477 86.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-252 876.3 482 86.9
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.1e-252 876.3 482 87.1
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.1e-252 876.3 477 86.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 5.3e-252 874.0 475 87.4
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.3e-252 874.0 478 86.6
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 2.0e-251 872.1 479 86.6
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 3.4e-251 871.3 473 85.6
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 3.4e-251 871.3 473 87.1
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 4.5e-251 870.9 474 86.9
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.0e-250 869.8 478 85.8
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.7e-250 869.0 473 87.5
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.2e-250 868.6 473 85.2
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.2e-250 868.6 471 86.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.2e-250 868.6 477 86.2
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.8e-250 867.8 476 86.6
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 5.0e-250 867.5 478 84.9
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 5.0e-250 867.5 472 86.9
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 6.5e-250 867.1 471 85.8
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 6.5e-250 867.1 473 86.3
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.4e-249 865.9 483 85.7
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.5e-249 865.1 477 86.0
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.2e-249 864.4 472 85.0
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 7.2e-249 863.6 471 85.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.2e-249 863.6 481 86.5
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 9.3e-249 863.2 471 85.6
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.7e-248 861.7 479 86.4
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-248 861.3 473 87.3
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 3.6e-248 861.3 479 86.2
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.6e-248 860.9 474 85.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 4.6e-248 860.9 479 86.4
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 7.9e-248 860.1 473 86.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.0e-247 859.8 479 84.3
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.0e-247 859.8 478 85.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.3e-247 859.4 471 85.4
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 2.3e-247 858.6 472 85.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.3e-247 858.6 474 85.7
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 3.0e-247 858.2 477 85.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 3.9e-247 857.8 471 85.8
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 3.9e-247 857.8 477 85.5
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.9e-247 857.8 476 85.3
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 5.1e-247 857.4 495 83.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 6.7e-247 857.1 477 85.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 8.7e-247 856.7 476 85.3
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 8.7e-247 856.7 474 86.7
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.1e-246 856.3 475 85.7
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.1e-246 856.3 481 83.6
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.5e-246 855.9 473 85.6
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.9e-246 855.5 481 84.2
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.3e-246 854.4 481 83.2
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 5.7e-246 854.0 475 84.6
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 7.4e-246 853.6 459 87.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 4.8e-245 850.9 474 84.6
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 6.3e-245 850.5 474 84.6
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.1e-244 849.7 457 88.2
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.4e-244 849.4 472 85.0
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 3.1e-244 848.2 474 85.4
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 5.3e-244 847.4 476 83.4
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 6.9e-244 847.0 482 84.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 6.9e-244 847.0 481 83.6
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.4e-243 844.7 475 85.3
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.5e-242 840.5 477 83.2
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.4e-241 839.3 444 88.7
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 7.2e-241 837.0 481 82.5
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 9.4e-241 836.6 472 86.0
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.6e-240 835.9 441 88.4
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 2.1e-240 835.5 480 82.5
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.9e-240 833.6 491 82.7
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.3e-239 832.0 478 84.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 8.8e-239 830.1 460 84.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.3e-237 826.2 472 83.9
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.8e-237 825.1 498 81.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 8.2e-237 823.5 456 84.9
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.1e-236 821.2 472 83.3
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 6.9e-236 820.5 479 81.6
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 4.5e-235 817.8 474 83.3
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.5e-235 817.8 476 81.7
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 6.3e-229 797.3 476 82.4
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 2.5e-225 785.4 506 76.9
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-225 785.4 501 77.6
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.5e-222 776.2 479 78.9
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 5.7e-222 774.2 479 78.9
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.8e-220 769.2 454 82.6
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.8e-212 742.7 503 74.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 4.1e-212 741.5 482 76.3
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 3.0e-207 725.3 385 87.0
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 2.6e-206 722.2 472 72.5
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 8.3e-205 717.2 450 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.1e-201 706.8 473 72.1
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.6e-200 701.8 477 70.0
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.9e-197 691.4 480 72.1
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.3e-189 664.1 368 82.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 3.2e-188 662.1 461 72.2
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 6.0e-187 657.9 368 82.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.1e-177 627.1 467 67.7
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.2e-171 607.1 477 64.8
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.3e-154 550.4 408 69.6
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.0e-150 536.6 304 81.2
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 6.0e-147 525.0 281 88.6
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 3.3e-145 519.2 275 88.7
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 8.2e-144 514.6 304 79.3
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.7e-141 506.9 410 62.2
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 9.7e-137 491.1 443 55.1
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.2e-134 484.2 304 77.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.4e-127 460.7 308 72.1
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.6e-107 392.9 228 79.8
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.7e-107 392.5 211 90.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 5.2e-106 389.0 412 51.2
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.7e-102 376.7 228 78.1
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.7e-102 376.7 228 78.1
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 4.7e-99 365.9 459 46.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 6.8e-90 335.5 200 82.0
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 8.6e-85 318.5 423 45.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 7.3e-76 288.9 175 75.4
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 4.7e-75 286.2 175 74.9
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 2.6e-73 280.4 147 85.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 6.6e-69 265.8 164 75.6
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.3e-68 263.5 164 75.0
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.6e-49 199.1 99 87.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.6e-49 199.1 99 87.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.6e-46 191.4 108 81.5
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.3e-37 161.8 105 72.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 2.3e-37 161.0 97 77.3
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-36 158.7 95 85.3
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.8e-34 151.4 77 88.3
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 7.1e-31 139.4 77 84.4
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.0e-29 135.6 86 72.1
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.3e-21 107.8 56 85.7
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.1e-21 106.7 135 40.7
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 8.7e-21 105.9 65 73.8
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.4e-18 97.8 70 61.4
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 4.2e-15 87.0 72 65.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.2e-15 87.0 72 65.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.2e-14 85.5 45 84.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 4.6e-14 83.6 73 63.0
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.9e-13 80.5 46 82.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 3.7e-11 73.9 34 94.1
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 1.1e-10 72.4 76 48.7
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 1.1e-10 72.4 50 62.0
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 1.4e-10 72.0 80 45.0
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 4.1e-10 70.5 53 56.6
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 4.1e-10 70.5 53 56.6
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 1.2e-09 68.9 51 56.9
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 1.5e-09 68.6 50 60.0
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 1.5e-09 68.6 50 60.0
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 2.0e-09 68.2 50 58.0
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 2.0e-09 68.2 50 58.0
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 3.4e-09 67.4 50 60.0
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 7.7e-09 66.2 34 88.2
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 5.0e-08 63.5 61 50.8
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.5e-08 62.8 64 56.2
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 1.4e-07 62.0 62 51.6


User provided reference genes

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