Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 3.5e-149 531.6 264 100.0
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 2.6e-128 462.2 263 89.4
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.0e-124 450.3 264 86.4
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 6.9e-121 437.6 291 78.7
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.9e-119 432.2 291 77.7
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.9e-118 429.5 279 80.3
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 1.4e-113 413.3 262 79.8
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 3.1e-113 412.1 250 82.0
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 4.5e-112 408.3 262 79.8
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 1.0e-111 407.1 258 79.1
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 8.5e-111 404.1 262 79.4
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 8.5e-111 404.1 262 79.0
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 1.4e-110 403.3 250 81.2
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 1.4e-110 403.3 257 80.5
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 1.9e-110 402.9 249 82.3
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 3.2e-110 402.1 260 76.5
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 9.4e-110 400.6 253 79.8
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 1.6e-109 399.8 263 78.7
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 4.7e-109 398.3 211 91.5
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 6.1e-109 397.9 262 76.3
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 1.0e-108 397.1 260 75.8
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 2.3e-108 396.0 262 76.7
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 2.3e-108 396.0 244 81.1
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 1.5e-107 393.3 262 74.4
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.5e-107 393.3 256 75.8
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 2.0e-107 392.9 230 84.3
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 9.7e-107 390.6 257 75.9
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 9.7e-107 390.6 274 73.0
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 1.7e-106 389.8 250 79.2
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 1.7e-106 389.8 262 75.6
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 2.2e-106 389.4 264 73.9
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 4.8e-106 388.3 262 74.4
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 1.1e-105 387.1 262 74.8
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 1.4e-105 386.7 231 81.0
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 1.2e-104 383.6 262 72.9
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 2.0e-104 382.9 237 81.0
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 5.9e-104 381.3 259 74.5
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 1.3e-103 380.2 251 76.9
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 1.3e-103 380.2 251 76.9
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 2.9e-103 379.0 258 73.3
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.9e-103 379.0 257 75.5
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 2.9e-103 379.0 233 78.5
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 6.5e-103 377.9 251 76.5
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 6.5e-103 377.9 249 75.9
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 8.5e-103 377.5 262 74.8
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 8.5e-103 377.5 248 76.6
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 1.1e-102 377.1 261 74.3
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 1.5e-102 376.7 244 75.8
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.9e-102 376.3 258 73.6
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 2.5e-102 375.9 220 85.9
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 3.2e-102 375.6 251 74.5
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 9.4e-102 374.0 257 72.4
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 9.4e-102 374.0 259 74.1
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 1.2e-101 373.6 263 73.4
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 1.6e-101 373.2 256 73.4
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 2.1e-101 372.9 271 70.1
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 2.1e-101 372.9 249 74.7
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 3.6e-101 372.1 238 75.2
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 4.7e-101 371.7 263 74.5
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 6.1e-101 371.3 249 74.7
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 2.3e-100 369.4 278 68.3
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 2.3e-100 369.4 256 72.3
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 3.0e-100 369.0 276 69.2
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 4.0e-100 368.6 248 74.2
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 5.2e-100 368.2 251 74.9
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 5.2e-100 368.2 260 71.5
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 6.7e-100 367.9 263 69.6
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.5e-99 366.7 235 77.4
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 2.6e-99 365.9 266 69.2
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 7.5e-99 364.4 256 70.7
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.3e-98 363.6 240 75.4
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 1.3e-98 363.6 240 75.8
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 1.7e-98 363.2 252 71.0
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 1.7e-98 363.2 242 73.1
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 1.7e-98 363.2 252 71.0
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.7e-98 363.2 240 75.0
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 2.8e-98 362.5 254 71.7
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 2.8e-98 362.5 254 71.7
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 5.3e-97 358.2 209 84.2
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 7.0e-97 357.8 248 72.2
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 1.7e-95 353.2 259 70.3
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 2.2e-95 352.8 229 73.8
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 2.9e-95 352.4 267 70.0
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 6.5e-95 351.3 247 72.9
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 6.5e-95 351.3 233 74.2
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 1.5e-94 350.1 213 78.9
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 3.2e-94 349.0 230 74.3
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 4.2e-94 348.6 236 75.4
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 9.4e-94 347.4 229 70.3
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 8.0e-93 344.4 218 76.6
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 8.0e-93 344.4 253 66.4
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 2.3e-92 342.8 250 68.4
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 2.6e-91 339.3 303 60.4
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 5.7e-91 338.2 213 78.9
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 2.2e-90 336.3 330 56.4
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 4.8e-90 335.1 209 78.5
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 2.4e-89 332.8 208 78.8
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 2.2e-87 326.2 208 75.5
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.2e-86 322.4 198 77.8
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 4.0e-84 315.5 199 79.4
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 8.9e-76 287.7 197 69.5
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 2.9e-74 282.7 330 52.1
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 1.4e-73 280.4 166 86.7
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 1.8e-73 280.0 228 61.4
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 5.0e-71 271.9 175 79.4
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 1.0e-68 264.2 231 55.8
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 3.3e-62 242.7 248 49.6
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 6.2e-61 238.4 234 52.6
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 2.6e-59 233.0 156 72.4
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 1.9e-54 216.9 230 50.0
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 1.6e-53 213.8 134 81.3
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 2.6e-51 206.5 135 75.6
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 7.1e-49 198.4 143 69.9
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 1.2e-48 197.6 143 69.2
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 3.5e-48 196.1 143 69.2
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 3.1e-44 183.0 177 56.5
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.8e-44 181.8 117 73.5
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 4.4e-43 179.1 115 80.0
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 1.1e-38 164.5 121 67.8
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 2.4e-36 156.8 96 79.2
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 4.9e-34 149.1 95 77.9
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 4.6e-32 142.5 100 72.0
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.0e-27 127.1 100 63.0
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.8e-21 105.9 105 57.1
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 8.4e-18 95.1 47 85.1
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 5.7e-14 82.4 121 45.5
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 4.8e-13 79.3 121 44.6
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 1.8e-12 77.4 171 28.7


User provided reference genes

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