Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 2370.5 1115 100.0
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 2151.7 1115 89.1
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 2142.1 1115 89.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 2136.7 1115 88.6
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 2135.5 1115 88.3
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 2133.2 1115 88.3
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1920.6 1116 78.5
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1916.7 1114 78.2
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1907.9 1110 77.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1904.8 1115 77.4
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1899.4 1118 77.6
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1890.9 1112 76.6
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1889.8 1112 76.5
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1868.2 1115 76.3
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1859.7 1117 75.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1859.7 1111 76.6
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1858.6 1129 74.9
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1855.9 1114 75.8
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1852.8 1116 76.0
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1834.3 1107 74.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1827.0 1118 74.6
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1822.0 1111 74.5
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1815.4 1113 73.5
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1812.0 1119 74.4
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1808.5 1113 72.7
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1800.4 1225 69.1
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1795.8 1074 75.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1795.0 1112 74.1
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1792.7 1109 72.6
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1792.7 1113 73.1
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1788.1 1105 73.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1783.5 1111 72.9
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1783.5 1116 72.2
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1780.8 1113 72.3
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1780.4 1105 73.1
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1779.2 1113 72.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1777.7 1113 72.5
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1775.0 1112 72.6
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1773.1 1112 72.8
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1771.5 1113 72.2
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1770.4 1105 72.8
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1112 72.5
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1113 72.1
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1769.6 1112 72.0
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1769.2 1096 72.9
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1768.4 1115 72.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1766.1 1115 73.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1764.2 1098 72.7
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1763.4 1112 72.5
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1761.9 1112 71.3
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1760.0 1109 72.1
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1758.8 1068 74.8
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1756.5 1115 71.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1755.3 1109 72.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1755.0 1113 72.0
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1753.4 1109 71.9
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1753.4 1104 72.4
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1751.9 1112 70.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1751.5 1120 70.6
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1751.5 1114 71.4
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1745.3 1113 70.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1743.4 1096 71.6
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1740.7 1122 70.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1732.2 1112 70.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1721.4 1097 71.1
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1719.5 1111 70.2
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1714.9 1071 72.5
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1122 69.3
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1711.4 991 78.4
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1707.6 1102 70.4
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1089 70.9
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1109 69.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1049 73.3
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1701.0 1109 68.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1699.5 1108 69.3
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1686.0 1112 69.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1684.5 1112 68.4
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1646.7 1106 68.7
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1645.2 1141 66.3
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1640.2 1121 66.5
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1617.8 1120 66.1
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1131 66.0
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1574.3 1165 63.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1567.7 1108 63.9
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1538.9 899 78.6
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1526.9 917 75.8
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1516.1 1077 63.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1501.1 997 69.1
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1339.3 832 73.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1338.6 833 74.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1330.9 1133 54.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1308.5 1095 55.7
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1306.6 1034 59.1
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1277.3 1107 54.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1249.2 749 75.2
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1218.8 741 73.8
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1203.3 761 71.7
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1194.1 1120 51.3
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1166.4 660 80.2
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 2.0e-310 1069.3 1136 47.8
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 8.6e-306 1053.9 691 70.5
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 7.2e-260 901.4 685 62.2
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.6e-238 829.7 498 76.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.2e-228 795.0 518 70.1
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.8e-226 790.4 518 70.1
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.0e-218 762.7 568 60.4
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 5.1e-165 586.3 1437 30.1
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 5.5e-159 566.2 387 69.3
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 5.1e-149 533.1 630 45.6
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.2e-145 521.9 285 83.5
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 7.9e-126 456.1 1111 30.2
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.6e-118 431.8 240 80.0
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 2.7e-113 414.5 625 38.1
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 5.9e-113 413.3 272 71.7
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 2.9e-96 357.8 197 82.2
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 4.9e-91 340.5 203 75.4
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.1e-87 329.3 259 59.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.9e-87 328.6 174 86.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.3e-77 295.0 208 65.9
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.8e-69 266.9 156 72.4
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.9e-66 258.8 164 75.0
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 1.7e-64 252.3 130 82.3
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.9e-59 234.2 208 53.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.6e-49 202.6 117 76.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.1e-45 189.9 125 70.4
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.4e-37 162.9 190 44.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.8e-37 162.5 161 52.8
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 5.8e-36 157.5 173 46.8
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.1e-34 153.3 136 50.7
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.6e-33 149.4 105 60.0
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 2.7e-33 148.7 141 51.8
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 6.0e-33 147.5 82 78.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.0e-32 146.7 136 52.2
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.8e-32 146.0 134 53.0
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.9e-32 144.8 141 54.6
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.1e-31 143.3 85 74.1
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 2.9e-27 128.6 96 60.4
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.4e-26 126.3 118 56.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.4e-26 126.3 75 68.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 1.1e-23 116.7 66 75.8
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 9.1e-21 107.1 53 84.9
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.3e-19 103.2 99 52.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.9e-18 99.4 136 44.9
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 3.2e-18 98.6 84 54.8
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 5.5e-18 97.8 101 47.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.2e-17 96.7 101 47.5
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 7.9e-17 94.0 44 86.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 5.1e-16 91.3 44 86.4
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.5e-15 89.7 88 50.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 4.4e-15 88.2 44 81.8
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 5.3e-13 81.3 56 64.3
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 1.0e-08 67.0 61 50.8
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 2.8e-06 58.9 48 58.3


User provided reference genes

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