Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1260.4 636 100.0
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1222.6 635 97.0
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1189.9 635 94.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1188.7 635 92.4
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1187.2 635 93.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1185.2 635 93.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 634 92.4
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1183.7 635 92.8
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1182.9 635 92.4
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1182.5 635 91.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1181.4 635 92.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1180.2 635 91.8
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 635 92.8
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 635 91.7
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1177.9 635 91.8
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 635 92.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1176.8 635 92.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 635 91.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1174.8 635 91.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1174.8 635 92.0
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 634 91.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1171.4 635 91.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 631 92.1
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 635 90.6
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 634 91.6
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 635 91.3
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 631 92.4
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 635 90.4
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 635 90.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 635 90.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 645 90.4
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 634 91.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 631 91.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 634 91.3
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 633 91.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 635 90.2
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 634 90.9
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 635 90.7
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 629 91.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 635 91.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 635 90.9
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 633 90.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 635 90.1
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 633 90.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 632 90.8
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 630 91.3
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 635 90.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 628 91.6
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 635 90.2
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 633 90.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 634 90.1
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 634 90.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 633 90.5
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 632 90.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 635 89.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 90.0
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 635 89.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 635 90.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 636 89.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 635 89.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 634 89.3
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 635 89.3
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 632 89.7
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 635 89.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 628 90.6
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 635 88.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 635 89.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 632 89.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 632 89.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 634 89.1
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 635 89.1
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 633 88.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.4
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.4
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.4
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 632 89.4
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 631 89.7
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 632 89.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 630 89.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 635 89.4
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 630 89.8
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 632 88.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 662 86.0
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 632 89.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 632 89.1
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 632 87.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 630 87.9
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 633 88.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 630 87.5
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 636 86.6
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 632 87.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 635 87.6
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 634 86.8
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 635 87.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 635 87.1
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 632 85.9
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1090.5 645 85.4
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 628 85.0
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 628 84.9
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 582 91.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.1e-310 1069.3 628 83.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.2e-298 1028.5 632 79.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 9.0e-292 1006.5 539 92.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 7.6e-291 1003.4 631 78.1
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 8.4e-282 973.4 534 89.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-281 972.6 534 89.7
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.9e-271 937.9 647 73.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-268 929.9 636 74.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.9e-265 919.1 629 73.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.5e-265 918.7 496 91.9
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 6.3e-261 904.0 650 71.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.0e-250 870.2 503 87.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 2.5e-249 865.5 634 73.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 4.2e-249 864.8 503 85.9
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 7.7e-243 844.0 635 71.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 7.0e-236 820.8 637 66.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.9e-233 812.8 497 81.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.6e-224 783.1 638 61.8
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.0e-206 723.0 444 82.4
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.0e-194 682.6 533 68.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.8e-183 646.7 638 53.4
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-180 636.3 446 74.2
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.0e-178 629.4 354 88.1
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.1e-167 592.8 409 75.6
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.3e-162 577.4 313 92.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 5.7e-153 545.4 295 91.5
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.6e-139 499.6 273 90.8
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.8e-114 417.5 534 42.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.6e-97 360.5 199 88.9
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.0e-89 334.3 238 71.4
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 6.4e-88 329.3 183 89.1
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 7.8e-86 322.4 231 70.6
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.1e-79 299.3 635 35.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 7.8e-78 295.8 163 88.3
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.8e-74 284.6 163 85.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.0e-61 240.7 273 50.9
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 3.0e-53 214.2 230 55.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.1e-44 185.7 103 88.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.3e-43 182.2 103 85.4
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 6.3e-43 179.9 158 66.5
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.7e-40 171.8 99 85.9
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.2e-39 167.5 104 76.0
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.9e-38 162.9 86 87.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.1e-36 159.1 90 87.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 8.2e-35 152.9 125 65.6
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 5.9e-33 146.7 91 80.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.7e-32 145.2 91 79.1
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 4.2e-31 140.6 74 86.5
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 8.8e-21 106.3 116 52.6
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.0e-20 105.1 53 96.2
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 5.3e-18 97.1 70 67.1
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.2e-16 91.7 51 82.4
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.0e-16 90.5 63 66.7
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 6.5e-16 90.1 50 86.0
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.5e-15 89.0 51 80.4
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 4.0e-13 80.9 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.5e-09 67.8 43 74.4


User provided reference genes

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