Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 3.6e-230 801.2 396 100.0
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 2.6e-127 459.5 386 64.0
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 2.8e-118 429.5 397 58.4
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 2.7e-92 343.2 391 50.1
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.2e-87 327.8 338 53.0
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 1.9e-82 310.5 403 48.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.6e-82 308.9 338 50.6
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 1.8e-80 303.9 385 47.3
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.1e-77 294.7 392 45.9
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.4e-77 294.3 400 44.5
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.9e-77 293.9 393 46.3
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 4.1e-77 292.7 291 53.6
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 9.2e-77 291.6 401 44.6
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 4.6e-76 289.3 417 42.7
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 6.0e-76 288.9 400 44.5
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.0e-75 288.1 402 43.5
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.0e-75 288.1 400 44.2
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.3e-75 287.7 399 44.6
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.9e-75 286.2 401 44.1
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 4.3e-74 282.7 383 43.3
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.6e-71 273.5 335 49.0
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 4.9e-70 269.2 385 43.1
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 7.3e-66 255.4 481 37.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.6e-65 253.1 400 40.0
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.9e-62 243.4 395 40.0
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 3.8e-62 243.0 385 40.8
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 7.8e-60 235.3 387 40.8
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 3.3e-58 229.9 396 39.6
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.4e-56 223.8 279 44.8
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 4.0e-56 223.0 387 37.2
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.5e-55 221.1 384 38.3
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 5.8e-55 219.2 284 46.1
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 7.6e-55 218.8 383 38.6
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 5.4e-53 212.6 323 41.5
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.1e-53 212.2 347 40.9
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.7e-51 207.6 330 41.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.7e-51 207.6 330 41.5
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 2.3e-51 207.2 341 41.3
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 4.3e-50 203.0 408 34.3
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 1.8e-48 197.6 423 36.6
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 3.1e-48 196.8 382 38.5
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 4.0e-48 196.4 385 36.9
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 2.0e-47 194.1 419 33.2
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 4.9e-46 189.5 328 37.2
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.4e-45 188.0 244 45.9
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 4.2e-45 186.4 351 36.8
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 7.1e-45 185.7 334 37.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.7e-44 183.7 357 38.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 7.9e-44 182.2 332 36.1
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.8e-43 181.0 384 33.3
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 2.3e-43 180.6 223 47.5
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 2.3e-43 180.6 223 47.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 5.6e-42 176.0 409 33.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 7.4e-42 175.6 349 33.5
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 7.4e-42 175.6 353 35.4
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 2.8e-41 173.7 233 46.4
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 6.2e-41 172.6 347 35.2
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 5.3e-40 169.5 370 34.3
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 9.0e-40 168.7 337 35.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 3.4e-39 166.8 280 40.7
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.4e-37 161.4 334 35.0
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 5.1e-35 152.9 343 35.3
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 8.7e-35 152.1 299 35.1
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 4.3e-34 149.8 217 41.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.4e-32 144.1 338 33.1
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 3.1e-32 143.7 337 34.4
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 6.9e-32 142.5 335 34.0
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 2.6e-31 140.6 345 32.8
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.2e-30 137.5 380 31.3
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.9e-30 137.1 397 30.7
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 8.4e-30 135.6 347 32.6
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 2.5e-29 134.0 189 43.4
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 7.1e-29 132.5 360 33.3
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 7.1e-29 132.5 175 46.3
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 7.1e-29 132.5 175 46.3
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.6e-28 131.3 332 34.0
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 1.3e-27 128.3 285 35.1
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 3.0e-27 127.1 355 31.0
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 1.5e-26 124.8 269 34.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.9e-26 124.4 377 31.0
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.9e-26 124.4 225 40.9
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.3e-25 121.7 335 35.2
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.3e-25 121.7 346 33.8
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.7e-25 120.2 178 42.7
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 4.8e-25 119.8 268 36.2
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.4e-24 118.2 340 30.9
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 3.1e-24 117.1 334 30.5
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 4.1e-24 116.7 403 31.3
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.2e-23 115.2 334 30.5
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 1.2e-23 115.2 339 32.4
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.5e-23 114.8 338 31.1
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.6e-23 114.0 346 30.3
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.4e-23 113.6 391 28.9
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.5e-23 113.2 337 31.2
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 5.9e-23 112.8 328 31.4
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 5.9e-23 112.8 332 30.7
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.0e-22 112.1 343 31.5
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.2e-22 110.9 341 31.4
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 3.8e-22 110.2 328 30.2
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 3.8e-22 110.2 347 30.5
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 5.0e-22 109.8 341 29.6
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 8.5e-22 109.0 339 29.5
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.9e-21 107.8 390 27.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.9e-21 107.8 115 47.8
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 3.2e-21 107.1 351 30.8
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 5.5e-21 106.3 339 29.2
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.4e-21 105.5 159 43.4
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.1e-20 104.4 339 28.9
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.1e-20 104.4 339 28.9
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.1e-20 104.4 339 28.9
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.8e-19 101.3 342 27.8
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.8e-19 101.3 342 27.8
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.3e-19 100.9 334 29.6
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 3.0e-19 100.5 310 30.0
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.5e-18 98.2 340 28.8
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.7e-17 94.7 345 27.2
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.8e-17 94.0 303 31.7
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.8e-17 93.2 386 29.3
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 4.1e-16 90.1 239 31.4
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 5.3e-16 89.7 336 27.1
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 5.3e-16 89.7 235 31.1
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 6.9e-16 89.4 261 31.0
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 1.2e-15 88.6 126 40.5
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.2e-15 88.6 333 27.3
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 1.5e-15 88.2 193 30.6
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 2.0e-15 87.8 114 43.0
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 1.7e-14 84.7 265 28.3
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.2e-14 84.3 169 36.7
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.8e-14 83.6 277 30.3
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.1e-13 82.0 103 44.7
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.4e-13 81.6 119 40.3
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.5e-13 80.9 115 40.0
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 9.4e-13 79.0 116 44.8
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 1.6e-12 78.2 307 28.7
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.9e-12 75.9 133 35.3
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.9e-11 73.6 92 47.8
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 8.8e-11 72.4 100 42.0
Peaxi162Scf00220g00314 Petunia axillaris HOM05D007266 ORTHO05D005982 2.0e-10 71.2 201 28.9
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 2.8e-09 67.4 243 30.9
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 6.3e-09 66.2 93 45.2
BolC3t12886H Brassica oleracea HOM05D008873 ORTHO05D005982 3.1e-08 63.9 89 43.8
C03p03440 Brassica napus HOM05D008873 ORTHO05D005982 2.0e-07 61.2 82 45.1
ECA240G2352 Erigeron canadensis HOM05D001416 ORTHO05D002549 2.0e-07 61.2 161 30.4
Solyc01g096620.4 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.6e-07 60.8 215 26.5
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 3.5e-07 60.5 143 30.1
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 7.7e-07 59.3 103 34.0
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 1.3e-06 58.5 145 30.3
ClCG10G009220 Citrullus lanatus HOM05D003662 ORTHO05D001824 1.7e-06 58.2 142 31.0
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.7e-06 58.2 111 34.2
Actinidia01518 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.2e-06 57.8 62 43.5
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 2.2e-06 57.8 145 30.3
Gohir.A02G138101 Gossypium hirsutum HOM05D002636 ORTHO05D022813 2.2e-06 57.8 35 77.1
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 2.9e-06 57.4 111 34.2
Medtr2g008750 Medicago truncatula HOM05D003662 ORTHO05D001824 2.9e-06 57.4 90 36.7
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 3.8e-06 57.0 117 33.3
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 5.0e-06 56.6 148 30.4
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 5.0e-06 56.6 156 26.9
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 5.0e-06 56.6 156 26.9
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 5.0e-06 56.6 103 33.0
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 6.5e-06 56.2 126 32.5
Duzib132G0110 Durio zibethinus HOM05D003662 ORTHO05D001824 6.5e-06 56.2 155 29.0
PGR042G2509 Punica granatum HOM05D003662 ORTHO05D001824 6.5e-06 56.2 102 35.3
SGA_v2.0_scaffold332G48962 Striga asiatica HOM05D003662 ORTHO05D001824 8.5e-06 55.8 177 28.2


User provided reference genes

Program Settings