Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 0.0e+00 1791.9 893 100.0
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 0.0e+00 1493.4 867 86.6
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 0.0e+00 1411.0 867 82.2
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 0.0e+00 1409.0 867 82.1
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 0.0e+00 1404.8 867 81.9
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 0.0e+00 1306.2 868 78.7
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 0.0e+00 1108.6 858 67.5
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 0.0e+00 1105.9 855 67.0
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 0.0e+00 1092.4 858 66.3
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 0.0e+00 1088.6 856 66.6
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 0.0e+00 1086.2 855 65.8
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 6.0e-310 1067.4 856 64.3
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 1.5e-305 1052.7 855 64.1
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 3.2e-303 1045.0 880 63.1
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 3.9e-301 1038.1 859 63.0
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 4.2e-295 1018.1 856 62.5
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 1.2e-294 1016.5 873 62.1
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 2.7e-294 1015.4 856 62.6
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.1e-292 1010.0 862 61.5
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 9.7e-292 1006.9 862 61.0
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.4e-290 1003.0 854 62.2
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.5e-289 999.6 862 60.9
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 3.4e-289 998.4 856 62.3
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 1.3e-288 996.5 862 61.1
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 6.5e-288 994.2 866 60.4
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 5.5e-287 991.1 854 60.7
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 2.3e-285 985.7 853 60.8
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 6.7e-285 984.2 856 61.1
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 7.0e-282 974.2 853 59.9
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 9.1e-282 973.8 879 60.0
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 8.5e-280 967.2 855 58.5
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.9e-279 966.1 854 60.2
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 2.7e-278 962.2 856 59.5
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 6.1e-278 961.1 863 60.7
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 3.3e-276 955.3 853 59.7
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 5.7e-276 954.5 858 58.4
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 2.4e-274 949.1 862 59.0
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 2.0e-273 946.0 859 58.8
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 3.5e-273 945.3 862 58.6
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 3.5e-273 945.3 855 58.1
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 5.9e-273 944.5 838 60.9
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 2.2e-272 942.6 861 59.0
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.5e-271 939.1 856 58.4
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 1.6e-270 936.4 866 57.7
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 2.1e-270 936.0 860 57.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.7e-267 926.4 857 56.2
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 2.4e-266 922.5 852 56.2
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.1e-263 913.7 898 56.3
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.5e-263 912.5 860 57.8
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 9.4e-263 910.6 706 65.3
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 5.2e-261 904.8 829 57.8
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.2e-259 899.4 1133 47.2
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 1.1e-258 897.1 855 55.8
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 3.5e-257 892.1 860 55.2
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.0e-256 890.6 860 55.0
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 8.6e-256 887.5 896 54.4
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 4.2e-255 885.2 832 57.0
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.2e-252 877.1 858 55.9
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 1.3e-251 873.6 881 54.4
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 4.9e-251 871.7 869 54.8
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 1.4e-250 870.2 863 54.5
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 4.1e-250 868.6 855 55.6
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 2.7e-249 865.9 855 54.7
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 5.9e-249 864.8 830 56.1
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 7.8e-249 864.4 833 55.8
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.9e-248 862.4 860 54.4
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 3.9e-248 862.1 860 54.0
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 6.6e-248 861.3 860 53.8
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 1.9e-247 859.8 837 55.2
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 7.3e-247 857.8 831 55.7
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 1.2e-246 857.1 830 55.8
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.2e-244 850.5 833 55.5
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 3.2e-242 842.4 824 55.1
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.6e-241 840.1 835 55.2
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 4.6e-241 838.6 841 54.1
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 3.3e-239 832.4 861 53.2
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 3.3e-239 832.4 668 63.9
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 5.6e-239 831.6 868 52.8
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.2e-238 830.5 855 52.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 4.7e-238 828.6 851 53.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 3.1e-237 825.9 833 55.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 4.7e-230 802.0 839 52.8
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 8.1e-230 801.2 856 51.1
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.8e-229 800.0 874 51.4
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 8.9e-229 797.7 831 52.7
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.1e-226 788.9 871 51.7
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.2e-222 777.3 802 53.5
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 4.9e-219 765.4 789 53.2
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 6.4e-219 765.0 708 57.5
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 9.2e-218 761.1 905 48.8
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 5.1e-216 755.4 880 49.1
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 7.8e-209 731.5 896 46.3
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 1.0e-208 731.1 715 54.7
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.0e-208 731.1 896 46.3
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 7.3e-207 724.9 608 63.0
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 8.1e-198 694.9 673 55.4
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 3.1e-197 693.0 888 45.7
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 1.2e-196 691.0 917 45.9
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.1e-191 674.5 565 63.2
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.7e-191 672.2 762 50.4
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 2.2e-179 633.6 834 45.9
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 2.0e-175 620.5 616 54.7
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 5.9e-172 609.0 608 54.8
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 1.3e-171 607.8 866 43.3
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.2e-146 523.1 632 49.5
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 6.8e-136 489.2 784 40.7
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 3.7e-126 456.8 773 40.4
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 1.1e-125 455.3 978 34.5
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.3e-123 448.4 550 48.2
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 9.5e-122 442.2 997 33.2
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 4.0e-120 436.8 339 65.5
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 5.4e-117 426.4 321 67.0
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 7.1e-117 426.0 416 56.2
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 5.4e-109 399.8 267 74.9
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 2.5e-106 391.0 862 33.4
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.3e-96 356.7 531 42.7
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.1e-89 334.7 295 59.3
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 6.9e-80 303.1 372 48.1
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 5.7e-74 283.5 1176 26.2
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.4e-61 242.3 259 49.4
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.8e-49 201.4 126 77.8
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 1.8e-48 198.7 280 41.4
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 4.7e-44 184.1 169 57.4
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 2.2e-33 148.7 205 42.0
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 7.2e-29 133.7 89 70.8
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 2.2e-25 122.1 119 53.8
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 1.6e-20 105.9 96 60.4
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 1.6e-20 105.9 96 60.4
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 4.7e-20 104.4 57 84.2
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 6.1e-20 104.0 85 58.8
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 2.7e-15 88.6 55 76.4
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 3.5e-15 88.2 90 54.4
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 5.9e-15 87.4 63 71.4
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 7.8e-15 87.0 178 33.1
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 7.3e-13 80.5 53 77.4
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 1.5e-10 72.8 280 23.9
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 7.5e-10 70.5 60 55.0
unitig_0.g726 Utricularia gibba HOM05D004952 ORTHO05D006131 2.2e-09 68.9 70 44.3
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 6.4e-09 67.4 62 54.8
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 3.5e-07 61.6 237 25.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 4.6e-07 61.2 244 25.4
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 1.0e-06 60.1 273 24.5
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.0e-06 60.1 259 26.6
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.3e-06 59.7 245 26.5
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.3e-06 59.7 259 26.6
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 3.0e-06 58.5 243 24.7
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 3.0e-06 58.5 231 23.8
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 3.9e-06 58.2 243 24.7
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 5.0e-06 57.8 244 24.2
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.6e-06 57.4 262 25.6
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 6.6e-06 57.4 44 56.8


User provided reference genes

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