Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.1e-119 433.3 216 100.0
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.1e-119 433.3 216 100.0
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 2.3e-106 389.0 216 90.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 6.7e-106 387.5 221 88.7
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.0e-105 386.0 216 89.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.3e-104 383.3 216 88.9
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.4e-95 353.2 216 79.2
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.2e-94 350.1 216 78.7
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-94 350.1 216 78.7
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.1e-91 339.3 216 78.2
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.4e-90 336.7 222 77.5
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 1.8e-90 336.3 216 75.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.8e-90 336.3 216 75.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 7.5e-89 330.9 213 76.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.7e-88 329.7 218 72.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.7e-88 329.7 214 74.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.2e-88 329.3 216 75.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.8e-88 328.9 216 72.7
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.3e-88 327.4 222 73.9
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.1e-87 327.0 216 74.1
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.8e-87 326.2 172 91.3
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.8e-87 326.2 216 72.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 3.1e-87 325.5 216 73.6
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.1e-87 325.5 216 75.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.0e-86 322.8 218 72.9
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 2.7e-86 322.4 216 70.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.9e-86 321.2 213 75.6
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 7.7e-86 320.9 216 71.3
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 7.7e-86 320.9 217 71.4
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.0e-85 320.5 215 74.9
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.0e-85 320.5 217 71.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.3e-85 320.1 215 72.1
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.7e-85 319.7 216 72.7
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.7e-85 319.7 214 73.4
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.2e-85 319.3 216 71.3
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 3.8e-85 318.5 216 71.3
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 5.0e-85 318.2 222 68.9
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 5.0e-85 318.2 218 73.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 8.5e-85 317.4 216 71.3
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.1e-84 317.0 214 71.0
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.5e-84 316.6 216 71.3
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.5e-84 316.6 218 71.6
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.5e-84 316.6 218 73.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.9e-84 316.2 216 70.4
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-84 315.8 214 72.0
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-84 315.8 214 72.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.5e-84 315.8 216 73.1
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.5e-84 315.8 214 70.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 5.5e-84 314.7 216 71.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 5.5e-84 314.7 215 72.6
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 5.5e-84 314.7 214 72.0
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 9.4e-84 313.9 220 70.0
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-83 313.2 214 70.6
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.7e-83 312.4 223 67.3
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.7e-83 312.4 218 72.9
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 4.7e-83 311.6 220 70.9
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 6.1e-83 311.2 213 72.8
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 8.0e-83 310.8 223 67.7
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.0e-82 310.5 216 71.3
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.8e-82 309.7 217 69.6
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.0e-82 308.9 214 71.5
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 6.8e-82 307.8 214 71.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 8.8e-82 307.4 212 73.1
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.5e-81 306.6 218 69.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 2.6e-81 305.8 224 66.1
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 2.6e-81 305.8 224 66.1
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 3.4e-81 305.4 218 68.8
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 5.7e-81 304.7 220 66.4
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 5.7e-81 304.7 214 68.7
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.7e-81 304.7 214 68.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 9.8e-81 303.9 213 68.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.3e-80 303.5 199 74.4
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.7e-80 303.1 221 69.2
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-80 302.8 224 65.6
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.2e-80 302.8 224 65.6
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.2e-80 302.8 224 65.6
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.8e-80 302.4 221 66.5
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 3.7e-80 302.0 224 65.6
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.7e-80 302.0 217 70.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 6.3e-80 301.2 226 68.6
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 8.3e-80 300.8 222 66.2
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 8.3e-80 300.8 213 68.5
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 8.3e-80 300.8 228 68.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-79 300.4 224 65.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.4e-79 300.1 199 74.9
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.4e-79 300.1 217 68.7
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.8e-79 299.7 211 69.7
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.8e-79 299.7 208 70.2
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.1e-79 298.9 216 70.4
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 3.1e-79 298.9 206 69.9
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 3.1e-79 298.9 228 67.5
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.6e-78 296.6 184 81.0
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.7e-78 295.8 202 73.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.7e-78 295.8 211 69.2
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 3.5e-78 295.4 221 65.6
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 3.8e-77 292.0 202 72.3
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 5.0e-77 291.6 214 68.7
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 8.6e-77 290.8 207 68.1
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.2e-75 287.0 188 72.9
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.6e-75 286.6 187 72.2
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.6e-75 286.6 218 66.5
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.8e-75 285.8 209 65.6
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 4.7e-75 285.0 217 68.7
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 3.0e-74 282.3 216 65.7
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.0e-74 282.0 206 67.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 5.2e-74 281.6 216 66.7
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.2e-73 280.4 247 59.5
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 7.5e-73 277.7 204 68.1
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.9e-72 275.8 146 90.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-71 273.5 184 70.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.4e-71 273.5 189 68.8
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.4e-71 271.6 223 63.7
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 2.7e-70 269.2 223 63.2
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 5.0e-69 265.0 216 59.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-66 256.9 172 70.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.0e-66 255.4 176 69.9
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 5.2e-66 255.0 218 59.2
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.8e-66 254.6 256 55.5
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.8e-66 254.6 256 55.5
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.2e-65 253.8 220 61.8
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.8e-65 251.5 145 84.1
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 7.5e-65 251.1 215 58.1
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.2e-62 243.8 182 65.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 6.6e-53 211.5 143 71.3
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.1e-52 210.7 193 58.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 1.6e-51 206.8 157 61.8
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.1e-50 202.6 150 68.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 6.4e-48 194.9 139 70.5
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-47 194.1 142 64.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.6e-46 190.3 211 45.5
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.0e-46 188.3 217 42.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.7e-45 186.8 189 50.3
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.3e-44 182.2 125 69.6
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 5.2e-42 175.3 143 62.9
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 7.6e-41 171.4 142 57.0
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.9e-40 168.7 124 65.3
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 5.4e-39 165.2 107 72.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.7e-38 162.9 203 41.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.8e-35 152.9 179 44.7
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 3.1e-34 149.4 149 45.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 4.0e-34 149.1 213 45.5
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 9.0e-34 147.9 206 38.3
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.4e-33 146.0 144 47.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.6e-30 137.1 196 37.8
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.5e-25 120.6 77 71.4
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.9e-24 116.3 75 69.3
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 3.5e-22 109.4 153 37.9
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-20 104.4 91 60.4
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 5.6e-20 102.1 75 66.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 2.8e-19 99.8 76 64.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.1e-18 97.8 75 64.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.2e-15 86.3 69 55.1
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 3.2e-15 86.3 58 67.2
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 4.2e-15 85.9 49 79.6
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 3.0e-13 79.7 77 53.2
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 3.9e-13 79.3 49 67.3
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.4e-10 70.1 71 54.9
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.9e-10 68.6 42 76.2
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 2.6e-09 66.6 55 58.2
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.9e-08 63.2 44 65.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 1.4e-07 60.8 33 78.8
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 5.5e-07 58.9 36 72.2
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 2.1e-06 57.0 109 32.1
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 3.6e-06 56.2 88 33.0
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 4.6e-06 55.8 87 33.3
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 4.6e-06 55.8 67 41.8
MD11G1297000 Malus domestica HOM05D001495 ORTHO05D001391 6.1e-06 55.5 115 32.2
Zm00001eb299290 Zea mays HOM05D000285 ORTHO05D000241 6.1e-06 55.5 64 34.4
MBI10_g26097_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 7.9e-06 55.1 88 30.7
HPP92_019575 Vanilla planifolia HOM05D000285 ORTHO05D000241 7.9e-06 55.1 89 30.3


User provided reference genes

Program Settings