Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.0e-93 345.1 169 100.0
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 2.6e-44 182.6 158 66.5
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.8e-43 179.1 160 63.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 6.3e-43 177.9 160 63.1
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.4e-42 176.0 160 62.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 2.4e-42 176.0 160 62.5
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 4.1e-42 175.3 160 63.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 5.4e-42 174.9 160 62.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.4e-42 174.9 160 63.1
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 7.0e-42 174.5 160 62.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 7.0e-42 174.5 160 61.9
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.6e-41 173.3 160 62.5
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.6e-41 173.3 160 61.2
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 1.6e-41 173.3 160 62.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 1.6e-41 173.3 162 61.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.0e-41 172.9 162 60.5
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.0e-41 172.9 162 60.5
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.0e-41 172.9 162 60.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.0e-41 172.9 162 60.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 3.5e-41 172.2 160 61.9
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 4.5e-41 171.8 162 61.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 4.5e-41 171.8 160 61.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 7.7e-41 171.0 160 60.6
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 7.7e-41 171.0 160 61.2
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 7.7e-41 171.0 160 61.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.3e-40 170.2 166 59.0
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.3e-40 170.2 160 61.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.7e-40 169.9 158 60.1
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 2.3e-40 169.5 155 62.6
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 2.9e-40 169.1 160 60.0
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 2.9e-40 169.1 160 59.4
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 2.9e-40 169.1 160 60.0
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.8e-40 168.7 160 58.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 6.6e-40 167.9 160 60.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 8.6e-40 167.5 158 60.1
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.1e-39 167.2 160 59.4
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.5e-39 166.8 158 60.1
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.5e-39 166.8 158 60.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.5e-39 166.8 157 61.1
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 1.5e-39 166.8 158 60.1
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.9e-39 166.4 156 60.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.9e-39 166.4 161 57.1
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.5e-39 166.0 160 59.4
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 2.5e-39 166.0 156 60.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 2.5e-39 166.0 163 57.1
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 2.5e-39 166.0 157 60.5
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 2.5e-39 166.0 157 60.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 3.3e-39 165.6 158 59.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 3.3e-39 165.6 168 56.5
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 4.2e-39 165.2 157 59.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 4.2e-39 165.2 152 61.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 4.2e-39 165.2 156 59.6
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 4.2e-39 165.2 161 60.9
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 9.5e-39 164.1 158 60.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 1.2e-38 163.7 158 58.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 1.2e-38 163.7 172 58.1
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.2e-38 163.7 160 57.5
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.6e-38 163.3 160 58.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 1.6e-38 163.3 157 59.2
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 2.1e-38 162.9 158 58.9
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.1e-38 162.9 158 58.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 2.8e-38 162.5 160 58.1
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 2.8e-38 162.5 159 54.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.6e-38 162.2 160 58.1
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 3.6e-38 162.2 156 59.0
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 3.6e-38 162.2 156 59.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 3.6e-38 162.2 156 59.0
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 3.6e-38 162.2 160 58.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 3.6e-38 162.2 160 58.8
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.6e-38 162.2 157 58.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 4.7e-38 161.8 159 57.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 4.7e-38 161.8 160 58.1
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 4.7e-38 161.8 160 58.1
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 4.7e-38 161.8 160 58.8
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.7e-38 161.8 158 59.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 6.1e-38 161.4 171 57.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.1e-38 161.4 160 58.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 6.1e-38 161.4 158 58.9
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 8.0e-38 161.0 158 58.9
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 8.0e-38 161.0 186 52.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 8.0e-38 161.0 158 58.2
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 8.0e-38 161.0 156 59.0
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 1.0e-37 160.6 159 57.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 1.0e-37 160.6 158 58.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 1.4e-37 160.2 156 58.3
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.4e-37 160.2 157 58.6
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.8e-37 159.8 158 58.9
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.8e-37 159.8 169 53.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 1.8e-37 159.8 158 58.2
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.3e-37 159.5 156 60.3
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 3.0e-37 159.1 158 58.2
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 4.0e-37 158.7 154 59.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 4.0e-37 158.7 152 57.2
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 5.2e-37 158.3 156 57.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 6.8e-37 157.9 152 57.2
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.2e-36 157.1 160 56.9
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 2.0e-36 156.4 156 58.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.0e-36 156.4 169 54.4
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 3.4e-36 155.6 154 58.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 5.7e-36 154.8 175 52.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.8e-35 152.5 198 47.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.7e-35 152.1 155 56.1
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.9e-35 151.8 152 55.9
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 1.1e-34 150.6 159 54.7
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.8e-34 149.8 161 56.5
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 5.4e-34 148.3 159 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.9e-31 139.8 157 51.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 5.6e-31 138.3 156 50.6
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.6e-30 135.6 145 55.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 3.2e-26 122.5 155 48.4
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.7e-24 116.7 68 80.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.5e-23 113.6 148 47.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.5e-23 112.8 200 39.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.3e-23 112.1 68 75.0
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 7.3e-23 111.3 162 48.8
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.5e-23 110.9 70 72.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 9.5e-23 110.9 147 46.9
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.6e-22 110.2 70 72.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.9e-21 104.4 152 44.1
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 7.5e-20 101.3 153 41.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.4e-18 97.1 158 43.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.3e-16 90.5 59 71.2
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.3e-16 90.5 92 52.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 5.1e-16 88.6 171 38.0
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-10 70.5 39 87.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.4e-10 70.5 39 87.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-10 70.5 39 87.2
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.4e-10 70.5 39 87.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 7.1e-10 68.2 41 75.6
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.2e-09 67.4 39 84.6
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 4.7e-06 55.5 39 59.0


User provided reference genes

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