Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 5.1e-183 644.4 361 100.0
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 2.9e-138 495.7 372 77.2
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 1.8e-119 433.3 364 73.4
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.3e-114 417.2 369 72.4
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.9e-113 413.3 364 72.5
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 4.6e-99 365.5 364 63.7
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 3.9e-90 335.9 382 55.5
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 4.2e-84 315.8 368 54.3
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 1.7e-82 310.5 267 63.3
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 3.3e-81 306.2 373 50.4
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.8e-79 300.4 365 54.0
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 3.1e-79 299.7 348 55.2
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 6.9e-79 298.5 289 59.2
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 3.4e-78 296.2 288 59.4
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 4.6e-75 285.8 375 50.7
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 1.6e-72 277.3 289 56.1
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.4e-71 273.5 276 59.1
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.1e-71 273.1 276 59.1
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 4.0e-71 272.7 342 51.5
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 1.5e-70 270.8 375 50.9
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 2.9e-69 266.5 360 52.5
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 8.4e-69 265.0 376 49.7
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 1.1e-68 264.6 365 49.0
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 7.1e-68 261.9 290 53.8
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.6e-67 260.8 359 47.4
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 1.6e-67 260.8 349 47.6
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 7.9e-67 258.5 378 48.7
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 7.9e-67 258.5 273 54.9
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.1e-65 254.6 305 51.8
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 1.1e-65 254.6 371 47.4
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 1.1e-65 254.6 363 50.7
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.5e-65 253.4 309 50.5
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 4.3e-65 252.7 369 47.4
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.7e-64 249.6 381 48.0
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 3.7e-64 249.6 383 48.6
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 4.8e-64 249.2 374 48.9
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 8.1e-64 248.4 300 52.3
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 4.0e-63 246.1 304 51.0
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 4.0e-63 246.1 298 50.7
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 1.2e-62 244.6 370 44.1
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 1.5e-62 244.2 283 50.5
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 3.4e-62 243.0 362 49.7
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 5.8e-62 242.3 372 48.4
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 5.8e-62 242.3 367 48.0
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 1.0e-61 241.5 374 47.1
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 1.3e-61 241.1 286 52.8
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 1.7e-61 240.7 352 48.0
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 2.9e-61 240.0 288 52.1
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 4.9e-61 239.2 381 49.6
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 4.9e-61 239.2 366 46.4
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.1e-60 238.0 290 49.7
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 1.4e-60 237.7 361 44.9
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.9e-60 237.3 364 47.3
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 2.5e-60 236.9 379 45.4
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 3.2e-60 236.5 368 44.8
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 2.1e-59 233.8 374 47.1
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 3.5e-59 233.0 370 47.6
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 4.6e-59 232.6 267 52.8
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 7.9e-59 231.9 371 45.8
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 1.0e-58 231.5 359 48.2
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 2.3e-58 230.3 303 49.2
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 3.9e-58 229.6 279 48.0
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.1e-57 228.0 297 50.2
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.9e-57 227.3 368 47.3
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 1.9e-57 227.3 228 57.5
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 2.5e-57 226.9 280 50.7
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 2.5e-57 226.9 367 46.3
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 7.4e-57 225.3 372 45.4
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 8.2e-56 221.9 368 49.2
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 1.8e-55 220.7 378 48.9
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.1e-55 219.9 358 45.0
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 3.1e-55 219.9 496 34.7
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 5.3e-55 219.2 362 45.6
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 6.9e-55 218.8 264 50.8
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 9.0e-55 218.4 358 47.5
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 1.5e-54 217.6 269 50.6
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 2.6e-54 216.9 367 48.8
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 6.5e-53 212.2 262 50.0
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.5e-52 210.3 335 46.9
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 3.2e-52 209.9 291 46.4
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 4.2e-52 209.5 205 56.6
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 7.2e-52 208.8 366 48.1
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 9.3e-52 208.4 364 42.3
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 4.6e-51 206.1 287 45.6
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 4.6e-51 206.1 247 49.8
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 7.9e-51 205.3 263 50.2
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 7.9e-51 205.3 327 42.8
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.8e-50 204.1 272 47.1
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 3.0e-50 203.4 328 43.0
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 3.9e-50 203.0 264 48.1
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 2.5e-49 200.3 287 46.3
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 2.0e-46 190.7 288 43.1
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 2.0e-46 190.7 317 41.0
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 1.0e-45 188.3 264 46.2
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.1e-44 184.9 343 39.1
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 2.5e-44 183.7 233 48.1
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 7.2e-44 182.2 291 43.0
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 9.4e-44 181.8 333 47.7
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 9.4e-44 181.8 364 37.4
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 1.2e-43 181.4 287 44.3
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 2.3e-42 177.2 294 40.1
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 1.1e-41 174.9 304 40.8
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 7.4e-41 172.2 155 59.4
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 2.8e-40 170.2 351 36.5
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 8.2e-40 168.7 172 55.2
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 6.7e-34 149.1 293 39.2
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 1.1e-31 141.7 305 34.8
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 4.1e-31 139.8 254 38.2
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 9.1e-31 138.7 241 36.9
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 4.2e-28 129.8 252 37.3
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 9.4e-28 128.6 303 38.0
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 1.7e-21 107.8 89 62.9
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 2.2e-21 107.5 120 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 2.5e-20 104.0 288 28.8
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 4.2e-20 103.2 292 32.2
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 2.0e-17 94.4 256 31.2
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 2.8e-16 90.5 170 36.5
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 1.1e-15 88.6 186 37.1
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 1.2e-14 85.1 101 53.5
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 1.2e-09 68.6 223 29.6
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 7.5e-09 65.9 218 29.4
Gohir.D04G091316 Gossypium hirsutum HOM05D046112 ORTHO05D046880 1.3e-08 65.1 58 62.1
Gorai.009G397300 Gossypium raimondii HOM05D046112 ORTHO05D046880 2.8e-08 63.9 57 63.2
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 5.4e-07 59.7 205 31.7
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 1.2e-06 58.5 200 36.0


User provided reference genes

Program Settings