Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 1.9e-90 335.9 173 100.0
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 9.3e-82 307.0 173 91.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 9.3e-82 307.0 173 91.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 9.3e-82 307.0 173 91.3
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 7.3e-79 297.4 174 87.4
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 1.3e-78 296.6 173 88.4
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 6.9e-77 290.8 173 86.1
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 1.3e-75 286.6 173 84.4
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 1.7e-75 286.2 173 83.2
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 4.9e-75 284.6 174 84.5
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 8.4e-75 283.9 173 82.7
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 1.1e-74 283.5 173 83.2
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 1.9e-74 282.7 173 82.7
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 2.4e-74 282.3 173 82.7
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 4.2e-74 281.6 173 82.7
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 5.4e-74 281.2 174 85.1
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.2e-73 280.0 175 85.1
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.6e-73 279.6 173 84.4
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 2.1e-73 279.3 173 83.8
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 7.8e-73 277.3 174 85.1
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.0e-72 276.9 172 83.7
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 1.7e-72 276.2 174 82.2
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 3.0e-72 275.4 173 80.3
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 3.9e-72 275.0 178 81.5
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 5.1e-72 274.6 172 83.1
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.6e-72 274.2 174 84.5
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.6e-72 274.2 174 84.5
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 8.7e-72 273.9 175 82.3
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.9e-71 272.7 174 83.9
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.9e-71 272.7 174 81.6
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.3e-71 271.9 174 83.9
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 4.3e-71 271.6 175 82.3
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 9.6e-71 270.4 173 79.2
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 9.6e-71 270.4 174 81.0
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.3e-70 270.0 175 82.3
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 1.6e-70 269.6 174 82.8
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 1.6e-70 269.6 175 81.1
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 1.6e-70 269.6 175 85.1
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 1.6e-70 269.6 176 80.7
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 1.6e-70 269.6 173 79.2
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 3.6e-70 268.5 173 79.2
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 3.6e-70 268.5 173 82.1
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 6.2e-70 267.7 173 79.8
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 3.1e-69 265.4 173 78.6
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 5.3e-69 264.6 166 84.9
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 6.9e-69 264.2 173 83.2
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 9.0e-69 263.8 173 80.9
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 1.2e-68 263.5 174 79.9
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 7.6e-68 260.8 175 80.6
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 9.9e-68 260.4 175 80.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 2.2e-67 259.2 174 79.3
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.2e-67 259.2 174 80.5
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 1.1e-66 256.9 176 77.8
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.4e-66 256.5 174 79.9
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 5.4e-66 254.6 173 78.0
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 9.3e-66 253.8 174 77.0
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 2.1e-65 252.7 175 79.4
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 7.9e-65 250.8 165 81.2
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 5.1e-64 248.1 174 75.3
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 6.7e-64 247.7 173 75.1
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 8.7e-64 247.3 173 75.1
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 3.3e-63 245.4 173 74.6
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 3.3e-63 245.4 175 78.3
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 2.1e-62 242.7 175 76.0
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.1e-62 242.7 173 75.7
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 4.8e-62 241.5 176 73.3
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.1e-61 240.4 174 75.3
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 1.4e-61 240.0 153 83.0
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 1.8e-61 239.6 177 72.9
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 2.4e-61 239.2 175 75.4
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 3.1e-61 238.8 175 74.3
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 1.5e-60 236.5 173 74.0
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 72.6
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 72.6
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-59 233.4 175 72.0
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 1.3e-59 233.4 175 73.1
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 2.2e-59 232.6 176 71.6
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 71.4
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 71.4
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 71.4
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 2.5e-58 229.2 175 70.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.2e-57 226.9 151 82.1
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 3.5e-57 225.3 174 70.1
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 3.0e-56 222.2 174 69.5
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 1.9e-55 219.5 153 79.1
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 4.3e-55 218.4 169 72.8
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 5.7e-55 218.0 173 66.5
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 7.6e-52 207.6 178 61.2
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-51 206.5 153 73.2
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 7.1e-50 201.1 140 70.7
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 9.3e-50 200.7 173 64.2
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 3.9e-48 195.3 167 62.3
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 4.3e-47 191.8 151 69.5
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 4.3e-47 191.8 138 79.0
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 5.3e-45 184.9 138 77.5
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 8.5e-43 177.6 113 88.5
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 1.1e-42 177.2 173 58.4
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 1.4e-42 176.8 165 64.8
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 3.2e-42 175.6 137 73.0
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 5.5e-42 174.9 137 72.3
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 2.7e-41 172.6 117 80.3
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 1.4e-40 170.2 181 54.7
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 6.3e-38 161.4 106 84.0
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 7.7e-36 154.5 155 60.6
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.9e-34 149.8 108 75.9
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.1e-31 140.6 112 72.3
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 2.1e-25 119.8 164 43.9
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 3.6e-25 119.0 98 71.4
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 2.3e-24 116.3 106 67.0
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 1.3e-22 110.5 165 41.8
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 2.6e-20 102.8 98 62.2
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 2.2e-19 99.8 69 78.3
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 5.0e-19 98.6 98 60.2
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 6.1e-17 91.7 77 67.5
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 2.0e-15 86.7 97 57.7
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 4.8e-14 82.0 59 74.6
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 4.8e-14 82.0 66 72.7
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 8.3e-14 81.3 122 50.0
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 1.4e-13 80.5 59 72.9
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 1.4e-13 80.5 59 72.9
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 3.1e-13 79.3 45 82.2
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 3.1e-13 79.3 95 52.6
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 5.4e-13 78.6 59 72.9
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 5.4e-13 78.6 59 71.2
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 5.4e-13 78.6 107 51.4
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.2e-12 77.4 60 73.3
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 7.7e-12 74.7 59 71.2
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 2.2e-11 73.2 80 56.2
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 3.8e-11 72.4 71 62.0
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 7.2e-10 68.2 81 54.3
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 4.7e-09 65.5 143 39.2
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 8.0e-09 64.7 43 81.4
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 3.0e-08 62.8 43 79.1
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 4.0e-08 62.4 101 46.5
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 1.2e-07 60.8 43 76.7
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 4.4e-07 58.9 46 78.3
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 4.4e-07 58.9 85 49.4
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 7.5e-07 58.2 60 56.7
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 1.3e-06 57.4 46 65.2
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.7e-06 57.0 60 55.0
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 4.9e-06 55.5 100 41.0


User provided reference genes

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