Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 9.4e-46 186.4 89 100.0
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-45 185.3 89 98.9
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-45 185.3 89 98.9
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.1e-45 185.3 89 98.9
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.1e-45 185.3 89 98.9
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-45 184.5 89 98.9
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-45 184.5 89 98.9
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.6e-45 184.5 89 98.9
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.1e-45 183.7 89 97.8
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.1e-45 183.7 89 97.8
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.1e-45 183.7 89 97.8
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.1e-45 183.7 89 97.8
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 7.9e-45 183.3 89 97.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.0e-44 183.0 89 96.6
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.0e-44 183.0 89 97.8
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.4e-44 182.6 89 96.6
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.4e-44 182.6 88 97.7
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.8e-44 182.2 89 96.6
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.8e-44 182.2 89 96.6
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.8e-44 182.2 89 96.6
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.3e-44 181.8 89 96.6
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 96.6
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 96.6
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 96.6
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 96.6
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 96.6
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 96.6
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 96.6
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 95.5
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 96.6
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.7e-44 180.3 89 96.6
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 95.5
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 95.5
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 8.8e-44 179.9 88 95.5
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 96.6
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 95.5
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.0e-43 178.7 88 94.3
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.0e-43 178.7 89 94.4
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.0e-43 178.7 90 96.7
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.0e-43 178.7 89 95.5
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.0e-43 178.7 89 94.4
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 95.5
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.4e-43 177.6 89 95.5
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.7e-43 177.2 89 93.3
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 95.5
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 82 100.0
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 82 100.0
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.3e-42 176.0 87 96.6
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 94.4
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 95.4
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 93.3
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 94.4
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.8e-42 174.9 89 95.5
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.8e-42 174.9 86 95.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.8e-42 174.9 85 96.5
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 94.4
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 92.1
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 4.8e-42 174.1 86 93.0
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 4.8e-42 174.1 87 94.3
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 4.8e-42 174.1 90 94.4
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 93.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 93.3
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 4.8e-42 174.1 88 92.0
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 6.3e-42 173.7 91 92.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.3e-42 173.7 89 92.1
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 94.4
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 94.4
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 94.4
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 8.2e-42 173.3 81 98.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 8.2e-42 173.3 81 98.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.2e-42 173.3 90 94.4
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 8.2e-42 173.3 84 96.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 1.1e-41 172.9 84 96.4
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 95.5
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 95.5
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 1.1e-41 172.9 82 97.6
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.8e-41 172.2 81 98.8
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.8e-41 172.2 86 91.9
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 91.0
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 89.9
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 2.4e-41 171.8 89 94.4
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 2.4e-41 171.8 91 91.2
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 3.1e-41 171.4 81 98.8
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 3.1e-41 171.4 90 91.1
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 94.4
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 5.3e-41 170.6 82 97.6
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.1e-41 169.9 89 93.3
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 9.1e-41 169.9 82 96.3
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.2e-40 169.5 85 92.9
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 92.1
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 92.1
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.5e-40 169.1 85 94.1
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.5e-40 169.1 85 91.8
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.5e-40 169.1 82 95.1
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-40 168.7 90 93.3
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.6e-40 168.3 82 95.1
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.6e-40 168.3 80 96.2
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 4.5e-40 167.5 85 91.8
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 4.5e-40 167.5 90 90.0
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 4.5e-40 167.5 80 96.2
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 88.8
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 5.9e-40 167.2 89 88.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 5.9e-40 167.2 97 85.6
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.9e-40 167.2 79 97.5
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 5.9e-40 167.2 83 94.0
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 7.7e-40 166.8 95 88.4
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 7.7e-40 166.8 82 95.1
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.0e-39 166.4 82 95.1
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.3e-39 166.0 89 87.6
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.3e-39 166.0 89 89.9
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 1.3e-39 166.0 82 95.1
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.3e-39 166.0 87 90.8
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.7e-39 165.6 84 90.5
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 5.0e-39 164.1 89 86.5
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 6.5e-39 163.7 99 82.8
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 6.5e-39 163.7 82 93.9
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-38 162.9 82 89.0
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 1.4e-38 162.5 81 91.4
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 1.9e-38 162.2 89 85.4
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.9e-38 162.2 85 89.4
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 2.5e-38 161.8 75 98.7
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.5e-38 160.6 84 90.5
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.5e-38 160.6 84 90.5
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 5.5e-38 160.6 92 87.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 7.2e-38 160.2 77 93.5
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 9.4e-38 159.8 78 94.9
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.1e-37 158.7 76 96.1
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.6e-37 157.9 78 91.0
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 4.7e-37 157.5 78 91.0
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 6.1e-37 157.1 76 92.1
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.0e-36 156.4 75 96.0
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.0e-36 156.4 89 82.0
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.3e-36 155.2 83 84.3
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 3.9e-36 154.5 83 90.4
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 5.2e-36 154.1 83 84.3
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 6.7e-36 153.7 83 86.7
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 6.7e-36 153.7 83 86.7
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.5e-35 152.5 74 91.9
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 1.5e-35 152.5 80 87.5
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 4.4e-35 151.0 77 90.9
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 5.7e-35 150.6 82 82.9
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.2e-34 148.7 74 89.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.2e-34 148.7 74 89.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.2e-34 148.7 74 89.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.2e-34 148.7 74 89.2
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.6e-32 141.7 85 84.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.5e-32 141.4 81 77.8
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 4.5e-32 141.0 70 88.6
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 7.2e-30 133.7 70 90.0
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.6e-29 132.5 91 70.3
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.6e-29 132.5 68 85.3
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.3e-28 128.6 69 79.7
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.2e-27 126.3 64 89.1
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 3.3e-27 124.8 66 87.9
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.8e-25 119.0 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.5e-24 114.8 63 82.5
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.7e-21 105.1 55 90.9
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 6.1e-21 104.0 48 100.0
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 8.0e-21 103.6 77 62.3
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 1.7e-18 95.9 66 72.7
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 5.4e-17 90.9 44 93.2
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 9.1e-17 90.1 52 80.8
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 1.5e-14 82.8 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 2.5e-14 82.0 46 80.4
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.5e-14 80.9 38 92.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.2e-14 80.5 67 64.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.5e-14 80.1 37 100.0
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.6e-13 79.3 47 83.0
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 3.6e-13 78.2 53 73.6
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-13 77.4 59 66.1
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 8.0e-13 77.0 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 8.0e-13 77.0 39 82.1
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.0e-11 72.4 38 92.1
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.3e-10 69.7 38 86.8
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.3e-10 67.4 51 60.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.2e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.7e-08 62.0 38 84.2
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.5e-06 56.2 29 86.2


User provided reference genes

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