Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G288800 Theobroma cacao HOM05D006649 ORTHO05D008754 3.9e-148 528.1 261 100.0
Duzib170G0763 Durio zibethinus HOM05D006649 ORTHO05D008754 4.1e-126 454.9 288 80.9
Gohir.A05G082800 Gossypium hirsutum HOM05D006649 ORTHO05D008754 1.2e-120 436.8 261 85.4
Gorai.009G087400 Gossypium raimondii HOM05D000146 ORTHO05D000178 2.6e-120 435.6 261 85.4
Gohir.D05G085700 Gossypium hirsutum HOM05D006649 ORTHO05D008754 5.8e-120 434.5 261 85.4
TWI79G0266 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.4e-97 359.4 245 75.1
TWI79G0985 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.4e-97 359.4 245 75.1
MD11G1159700 Malus domestica HOM05D006649 ORTHO05D008754 1.3e-95 353.6 249 72.3
Nn6g35002 Nelumbo nucifera HOM05D006649 ORTHO05D008754 7.1e-94 347.8 254 73.6
Prupe.6G122700 Prunus persica HOM05D006649 ORTHO05D008754 2.1e-93 346.3 250 73.2
Atru.chr3.3344 Acer truncatum HOM05D006649 ORTHO05D008754 6.0e-93 344.7 254 72.4
Haze_23431 Corylus avellana HOM05D006649 ORTHO05D008754 2.3e-92 342.8 185 88.6
Lj3g0022718 Lotus japonicus HOM05D006649 ORTHO05D008754 3.9e-92 342.0 243 74.1
QL01p013359 Quercus lobata HOM05D006649 ORTHO05D008754 9.6e-91 337.4 184 88.0
Cfa010067 Carpinus fangiana HOM05D006649 ORTHO05D008754 2.1e-90 336.3 185 87.6
Rhsim13G0107300 Rhododendron simsii HOM05D006649 ORTHO05D008754 2.1e-90 336.3 244 70.9
FAN25G2701 Fragaria x ananassa HOM05D006649 ORTHO05D008754 3.7e-90 335.5 243 72.4
RcHm_v2.0_Chr5g0043851 Rosa chinensis HOM05D006649 ORTHO05D008754 1.1e-89 334.0 237 72.2
PGR119G1752 Punica granatum HOM05D006649 ORTHO05D008754 5.3e-89 331.6 251 70.9
Potri.009G146800 Populus trichocarpa HOM05D006649 ORTHO05D008754 9.0e-89 330.9 251 70.1
GSVIVG01031373001 Vitis vinifera HOM05D006649 ORTHO05D008754 9.0e-89 330.9 175 89.1
TAR633G2780 Trochodendron aralioides HOM05D006649 ORTHO05D008754 1.2e-88 330.5 246 71.1
TPR.G15571 Trifolium pratense HOM05D006649 ORTHO05D008754 1.5e-88 330.1 244 72.5
Manes.04G006800 Manihot esculenta HOM05D006649 ORTHO05D008754 2.6e-88 329.3 268 66.8
Sabra09G0115900 Salix brachista HOM05D006649 ORTHO05D008754 3.4e-88 328.9 263 67.7
vmacro03292 Vaccinium macrocarpon HOM05D006649 ORTHO05D008754 3.4e-88 328.9 262 67.6
Potri.004G186400 Populus trichocarpa HOM05D006649 ORTHO05D008754 4.5e-88 328.6 255 71.0
CiPaw.13G139500 Carya illinoinensis HOM05D006649 ORTHO05D008754 1.0e-87 327.4 185 84.3
Hma1.2p1_0695F.1_g204540 Hydrangea macrophylla HOM05D006649 ORTHO05D008754 1.3e-87 327.0 240 69.2
VMungo1127G2203 Vigna mungo HOM05D006649 ORTHO05D008754 2.2e-87 326.2 254 69.7
Phvul.011G091000 Phaseolus vulgaris HOM05D006649 ORTHO05D008754 4.2e-86 322.0 242 69.8
PSO384G2883 Papaver somniferum HOM05D006649 ORTHO05D008754 7.2e-86 321.2 248 68.5
Ca_19382_v3 Cicer arietinum L. HOM05D006649 ORTHO05D008754 1.6e-85 320.1 254 68.9
Oeu035544.1 Olea europaea HOM05D006649 ORTHO05D008754 2.1e-85 319.7 225 71.6
Actinidia24190 Actinidia chinensis HOM05D006649 ORTHO05D008754 2.7e-85 319.3 183 85.8
Manes.11G159300 Manihot esculenta HOM05D006649 ORTHO05D008754 2.7e-85 319.3 258 68.2
Nn2g14062 Nelumbo nucifera HOM05D006649 ORTHO05D008754 2.7e-85 319.3 170 90.0
COL.COLO4_19946 Corchorus olitorius HOM05D000146 ORTHO05D000178 3.9e-84 315.5 216 75.0
Eucgr.J00458 Eucalyptus grandis HOM05D006649 ORTHO05D008754 8.7e-84 314.3 252 65.1
Psat7g189840 Pisum sativum HOM05D006649 ORTHO05D008754 8.7e-84 314.3 243 68.3
arahy.Tifrunner.gnm1.ann1.AS0IPM Arachis hypogaea HOM05D006649 ORTHO05D008754 1.1e-83 313.9 253 64.8
arahy.Tifrunner.gnm1.ann1.WDN5HE Arachis hypogaea HOM05D006649 ORTHO05D008754 1.1e-83 313.9 253 64.8
Sp5g16580 Schrenkiella parvula HOM05D006649 ORTHO05D008754 2.5e-83 312.8 254 64.2
Nitab4.5_0009861g0020 Nicotiana tabacum HOM05D006649 ORTHO05D008754 3.3e-83 312.4 255 66.3
Medtr4g055030 Medicago truncatula HOM05D006649 ORTHO05D008754 4.3e-83 312.0 180 82.8
Cc01_g09580 Coffea canephora HOM05D006649 ORTHO05D008754 5.7e-83 311.6 186 79.6
THA.LOC104810902 Tarenaya hassleriana HOM05D006649 ORTHO05D008754 5.7e-83 311.6 250 65.6
Glyma.12G086800 Glycine max HOM05D006649 ORTHO05D008754 9.7e-83 310.8 244 70.1
Lalb_Chr19g0136681 Lupinus albus HOM05D006649 ORTHO05D008754 1.3e-82 310.5 249 66.7
Hund20864 Selenicereus undatus HOM05D006649 ORTHO05D008754 1.3e-82 310.5 237 69.2
CsaV3_6G014840 Cucumis sativus L. HOM05D006649 ORTHO05D008754 1.6e-82 310.1 235 70.2
Carub.0005s1026 Capsella rubella HOM05D006649 ORTHO05D008754 3.7e-82 308.9 235 65.5
Lj2A991T88 Lonicera japonica HOM05D006649 ORTHO05D008754 4.8e-82 308.5 231 69.3
AT3G44620 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 1.1e-81 307.4 242 64.5
SGA_v2.0_scaffold147G36353 Striga asiatica HOM05D006649 ORTHO05D008754 1.1e-81 307.4 227 70.0
C03p69000 Brassica napus HOM05D006649 ORTHO05D008754 3.1e-81 305.8 253 63.2
AUR62009801 Chenopodium quinoa HOM05D006649 ORTHO05D008754 5.3e-81 305.1 249 65.9
PSO339G3959 Papaver somniferum HOM05D006649 ORTHO05D008754 5.3e-81 305.1 180 80.6
BcaC01g02065 Brassica carinata HOM05D006649 ORTHO05D008754 6.9e-81 304.7 253 63.2
BolC3t19153H Brassica oleracea HOM05D006649 ORTHO05D008754 6.9e-81 304.7 253 63.2
Carub.0015s0017 Capsella rubella HOM05D006649 ORTHO05D008754 6.9e-81 304.7 245 63.3
BcaB01g01150 Brassica carinata HOM05D006649 ORTHO05D008754 9.0e-81 304.3 242 64.5
Glyma.11G187700 Glycine max HOM05D006649 ORTHO05D008754 9.0e-81 304.3 175 83.4
HanXRQChr01g0019741 Helianthus annuus HOM05D006649 ORTHO05D008754 1.2e-80 303.9 243 65.8
AUR62039249 Chenopodium quinoa HOM05D006649 ORTHO05D008754 7.7e-80 301.2 179 81.6
A06p21790 Brassica napus HOM05D006649 ORTHO05D008754 1.0e-79 300.8 253 62.5
Lsat_1_v5_gn_1_62060 Lactuca sativa HOM05D006649 ORTHO05D008754 2.9e-79 299.3 244 65.6
SalBow6G0396 Salvia bowleyana HOM05D006649 ORTHO05D008754 2.9e-79 299.3 218 70.6
Sabra04G0125600 Salix brachista HOM05D006649 ORTHO05D008754 3.8e-79 298.9 168 84.5
CARHR151530 Cardamine hirsuta HOM05D006649 ORTHO05D008754 5.0e-79 298.5 241 63.9
Solyc11g067060.3 Solanum lycopersicum HOM05D006649 ORTHO05D008754 6.5e-79 298.1 259 62.9
EL10Ac7g15785 Beta vulgaris HOM05D006649 ORTHO05D008754 1.4e-78 297.0 235 66.4
CANSAT54G3044 Cannabis sativa HOM05D006649 ORTHO05D008754 1.9e-78 296.6 168 80.4
DCAR_006154 Daucus carota HOM05D006649 ORTHO05D008754 1.9e-78 296.6 180 78.9
CAN.G644.11 Capsicum annuum HOM05D006649 ORTHO05D008754 2.5e-78 296.2 255 62.0
BraA06t25266Z Brassica rapa HOM05D006649 ORTHO05D008754 7.2e-78 294.7 254 61.8
Migut.N02505 Erythranthe guttata HOM05D006649 ORTHO05D008754 1.2e-77 293.9 235 65.1
CSS0006150 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 2.1e-77 293.1 186 79.0
PGSC0003DMG400026546 Solanum tuberosum HOM05D006649 ORTHO05D008754 6.1e-77 291.6 166 82.5
Carub.0015s0012 Capsella rubella HOM05D006649 ORTHO05D008754 3.9e-76 288.9 165 81.2
Sopen11g026770 Solanum pennellii HOM05D006649 ORTHO05D008754 5.1e-76 288.5 168 81.0
Aa31LG4G14340 Aethionema arabicum HOM05D006649 ORTHO05D008754 1.1e-75 287.3 296 53.7
Sc21g0004770 Simmondsia chinensis HOM05D006649 ORTHO05D008754 1.1e-75 287.3 228 64.5
Os08g0557400 Oryza sativa ssp. japonica HOM05D006649 ORTHO05D008754 1.3e-74 283.9 204 66.2
unitig_8.g3286 Utricularia gibba HOM05D006649 ORTHO05D008754 2.2e-74 283.1 233 63.5
TPR.G9708 Trifolium pratense HOM05D006649 ORTHO05D008754 1.1e-73 280.8 180 78.3
ATR0820G177 Amborella trichopoda HOM05D006649 ORTHO05D008754 2.4e-73 279.6 182 74.7
HPP92_013801 Vanilla planifolia HOM05D006649 ORTHO05D008754 3.4e-72 275.8 245 58.0
Nitab4.5_0006735g0030 Nicotiana tabacum HOM05D006649 ORTHO05D008754 3.2e-70 269.2 160 81.9
CSS0022960 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 1.6e-69 266.9 191 72.8
Actinidia07225 Actinidia chinensis HOM05D006649 ORTHO05D008754 1.4e-68 263.8 196 71.4
Pp3c2_15060 Physcomitrium patens HOM05D006649 ORTHO05D008754 1.5e-67 260.4 174 69.5
MELO3C021441.2 Cucumis melo HOM05D006649 ORTHO05D008754 1.5e-62 243.8 217 63.1
CBR_g29713 Chara braunii HOM05D006649 ORTHO05D008754 7.2e-62 241.5 191 62.8
FvH4_3g24360 Fragaria vesca HOM05D006649 ORTHO05D008754 9.4e-62 241.1 195 67.2
Mapoly0056s0130 Marchantia polymorpha HOM05D006649 ORTHO05D008754 1.6e-61 240.4 170 64.7
CDE08G1146 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 3.0e-60 236.1 199 62.3
SMO356G0095 Selaginella moellendorffii HOM05D006649 ORTHO05D008754 3.0e-60 236.1 173 64.7
ClCG02G022010 Citrullus lanatus HOM05D006649 ORTHO05D008754 8.8e-60 234.6 218 60.1
Zm00001eb339600 Zea mays HOM05D006649 ORTHO05D008754 1.8e-52 210.3 131 74.0
Dinv29440 Davidia involucrata HOM05D006649 ORTHO05D008754 2.6e-51 206.5 117 83.8
Zm00001eb382760 Zea mays HOM05D006649 ORTHO05D008754 3.7e-50 202.6 126 73.8
Duzib168G0232 Durio zibethinus HOM05D006649 ORTHO05D008754 1.1e-49 201.1 111 90.1
Peaxi162Scf01284g00017 Petunia axillaris HOM05D006649 ORTHO05D008754 1.1e-49 201.1 236 52.1
Thhalv10002731m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 6.5e-47 191.8 115 76.5
Ah.15g095620 Amaranthus hybridus HOM05D006649 ORTHO05D008754 5.5e-46 188.7 116 75.9
AL5G22830 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 3.6e-45 186.0 115 73.9
AL5G22760 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 8.0e-45 184.9 115 73.9
Sed0010741 Sechium edule HOM05D006649 ORTHO05D008754 3.0e-44 183.0 174 62.1
Cre14.g632767 Chlamydomonas reinhardtii HOM05D006649 ORTHO05D008754 3.1e-41 172.9 186 48.9
Zm00001eb039610 Zea mays HOM05D006649 ORTHO05D008754 7.0e-41 171.8 167 57.5
PRCOL_00004711 Prasinoderma coloniale HOM05D006649 ORTHO05D008754 2.3e-39 166.8 179 46.9
SEGI_31986 Sequoiadendron giganteum HOM05D006649 ORTHO05D008754 2.9e-39 166.4 109 71.6
Thhalv10003008m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 1.3e-26 124.4 127 59.1
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 7.3e-22 108.6 157 39.5
CDE06G0522 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 5.1e-15 85.9 61 70.5
CBR_g19487 Chara braunii HOM05D006649 ORTHO05D023509 1.1e-14 84.7 170 30.6
Mapoly0054s0048 Marchantia polymorpha HOM05D006649 ORTHO05D023509 1.9e-14 84.0 206 28.2
Pp3c1_29030 Physcomitrium patens HOM05D006649 ORTHO05D023509 6.2e-13 79.0 181 28.2
GSVIVG01023086001 Vitis vinifera HOM05D006649 ORTHO05D008754 5.8e-11 72.4 54 66.7
AT3G44485 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 3.9e-07 59.7 60 53.3
AagrBONN_evm.TU.Sc2ySwM_340.195 Anthoceros agrestis HOM05D006649 ORTHO05D023509 9.6e-06 55.1 99 31.3


User provided reference genes

Program Settings