Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 6.1e-277 956.8 474 100.0
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 2.2e-202 709.1 411 85.4
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.7e-194 682.9 384 87.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.1e-190 670.2 411 79.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.8e-183 646.4 411 77.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.5e-179 633.3 384 80.2
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.1e-177 627.1 384 77.9
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 3.2e-177 625.5 384 76.0
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 3.2e-177 625.5 384 77.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 4.2e-177 625.2 384 77.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.0e-175 620.5 384 77.3
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.1e-172 610.5 411 74.2
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 6.9e-172 607.8 384 74.0
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 4.5e-171 605.1 384 74.5
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.7e-170 603.2 384 75.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 5.0e-170 601.7 415 70.8
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.1e-169 600.5 384 76.0
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 5.7e-166 588.2 415 71.1
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.8e-165 585.9 384 72.9
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.8e-165 585.9 384 72.9
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.8e-165 585.9 432 67.1
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.4e-164 583.6 384 72.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.6e-163 579.3 438 65.3
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 5.9e-163 578.2 384 73.2
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.0e-162 577.4 384 70.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.6e-160 570.1 384 70.8
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 2.1e-160 569.7 384 71.4
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 6.1e-160 568.2 384 71.4
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.2e-158 563.9 429 64.3
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 3.3e-158 562.4 384 70.8
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 7.5e-158 561.2 386 69.9
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 2.4e-156 556.2 386 69.7
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.1e-156 555.8 407 66.3
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 5.9e-155 551.6 384 68.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 7.7e-155 551.2 386 69.2
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.3e-154 550.4 386 70.7
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.9e-154 549.3 384 70.1
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 6.5e-154 548.1 384 68.2
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.5e-153 547.0 384 65.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 3.2e-153 545.8 384 68.8
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 4.2e-153 545.4 384 66.9
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 4.2e-153 545.4 384 68.2
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.3e-151 539.7 384 68.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 8.8e-151 537.7 384 68.0
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.6e-150 536.2 414 65.0
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 7.5e-150 534.6 386 65.8
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 9.8e-150 534.3 384 65.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-149 533.5 384 65.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 8.3e-149 531.2 383 66.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 7.0e-148 528.1 384 66.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.0e-146 524.2 384 66.1
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.7e-146 523.5 384 64.1
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 2.3e-146 523.1 384 64.6
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 2.9e-146 522.7 384 67.4
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 5.0e-146 521.9 384 67.2
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 6.5e-146 521.5 413 62.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 3.2e-145 519.2 395 63.3
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.2e-145 519.2 384 63.0
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 5.5e-145 518.5 384 63.5
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 9.5e-145 517.7 395 63.0
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 2.1e-144 516.5 352 71.3
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.3e-143 513.1 384 64.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.7e-141 505.8 385 65.2
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 8.3e-141 504.6 384 65.6
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 8.3e-141 504.6 413 61.0
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 7.0e-140 501.5 382 63.9
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 2.0e-139 500.0 385 62.6
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 3.5e-139 499.2 385 64.7
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.5e-137 493.0 385 63.1
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.3e-137 492.7 385 63.9
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.3e-137 492.7 441 60.1
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.2e-136 490.7 385 60.8
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.6e-136 490.3 462 55.8
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.1e-136 490.0 462 55.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 6.1e-136 488.4 384 64.8
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 4.0e-135 485.7 462 56.3
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 6.8e-135 485.0 383 62.7
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 3.4e-134 482.6 462 55.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.3e-133 480.7 385 60.0
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.9e-133 479.6 385 60.8
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 4.9e-133 478.8 386 63.7
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 2.4e-132 476.5 375 61.6
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 3.2e-132 476.1 441 54.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 6.6e-130 468.4 385 61.8
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.7e-122 443.7 382 55.0
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 6.6e-122 441.8 266 78.6
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 4.9e-117 425.6 363 60.9
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 8.3e-117 424.9 444 51.4
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.1e-116 421.8 388 59.0
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.1e-116 421.8 388 59.0
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 2.8e-112 409.8 385 54.8
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 4.7e-112 409.1 281 69.4
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.9e-109 399.1 302 64.2
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 8.4e-109 398.3 374 49.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.2e-108 396.4 279 70.3
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.2e-104 384.4 416 49.3
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.8e-103 380.6 388 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 5.8e-102 375.6 412 48.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 2.2e-101 373.6 367 53.7
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 6.0e-99 365.5 384 52.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.3e-98 364.4 415 47.0
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.1e-97 361.3 397 45.8
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.3e-97 359.8 221 78.7
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 2.8e-96 356.7 365 52.3
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 7.9e-91 338.6 233 67.0
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.3e-90 337.8 257 66.5
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 3.8e-85 319.7 382 46.1
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.2e-84 316.6 196 82.7
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 8.2e-80 302.0 346 43.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 4.6e-75 286.2 384 43.5
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.4e-68 264.6 385 43.4
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.3e-66 257.3 208 60.6
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 3.9e-66 256.5 179 71.5
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.6e-59 234.6 190 63.7
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 2.0e-54 217.6 244 45.5
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.4e-47 194.9 113 76.1
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 3.1e-47 193.7 183 51.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.5e-44 184.1 134 67.2
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 2.7e-43 180.6 205 52.2
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 6.7e-42 176.0 112 69.6
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 6.1e-27 126.3 146 45.9
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-21 108.2 61 77.0
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 8.9e-18 95.9 73 61.6
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.5e-12 78.6 102 46.1
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 4.0e-10 70.5 124 40.3
Thecc.09G250100 Theobroma cacao HOM05D000189 ORTHO05D000474 8.9e-10 69.3 50 70.0
Gohir.A08G009900 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.2e-09 68.9 50 68.0
Gohir.D08G020000 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.2e-09 68.9 50 68.0
Gorai.004G014600 Gossypium raimondii HOM05D000189 ORTHO05D000474 1.2e-09 68.9 50 68.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 2.6e-09 67.8 66 51.5
COL.COLO4_33274 Corchorus olitorius HOM05D000189 ORTHO05D000474 3.4e-09 67.4 50 70.0
Duzib170G1060 Durio zibethinus HOM05D000189 ORTHO05D000474 5.8e-09 66.6 50 66.0
Gohir.D09G106300 Gossypium hirsutum HOM05D000189 ORTHO05D000474 7.5e-09 66.2 50 66.0
Gorai.006G123800 Gossypium raimondii HOM05D000189 ORTHO05D000474 7.5e-09 66.2 50 66.0
Manes.01G180100 Manihot esculenta HOM05D000189 ORTHO05D000474 1.7e-08 65.1 50 64.0
Manes.02G140700 Manihot esculenta HOM05D000189 ORTHO05D000474 2.2e-08 64.7 50 62.0
Atru.chr3.2784 Acer truncatum HOM05D000189 ORTHO05D000474 3.7e-08 63.9 50 64.0
Duzib150G0557 Durio zibethinus HOM05D000189 ORTHO05D000474 6.4e-08 63.2 50 64.0
Sabra09G0054100 Salix brachista HOM05D000189 ORTHO05D000474 8.3e-08 62.8 50 62.0
Gohir.A09G109800 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.4e-07 62.0 50 64.0
Oeu043282.1 Olea europaea HOM05D000189 ORTHO05D000474 1.4e-07 62.0 50 56.0
Potri.001G276900 Populus trichocarpa HOM05D000189 ORTHO05D000474 1.4e-07 62.0 50 62.0
Sabra16G0171000 Salix brachista HOM05D000189 ORTHO05D000474 1.4e-07 62.0 50 62.0
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.4e-07 62.0 42 59.5
CANSAT54G0830 Cannabis sativa HOM05D000189 ORTHO05D000474 2.4e-07 61.2 50 60.0
VMungo0647G1503 Vigna mungo HOM05D000189 ORTHO05D000474 7.0e-07 59.7 50 60.0
FvH4_3g28000 Fragaria vesca HOM05D000189 ORTHO05D000474 1.6e-06 58.5 50 58.0
FAN21G3014 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-06 58.5 50 58.0
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-06 58.5 50 58.0
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-06 58.5 50 58.0
FAN25G0899 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-06 58.5 50 58.0
RcHm_v2.0_Chr5g0050701 Rosa chinensis HOM05D000189 ORTHO05D000474 1.6e-06 58.5 50 58.0
Oeu030628.1 Olea europaea HOM05D000189 ORTHO05D000474 2.1e-06 58.2 51 56.9
Potri.009G071800 Populus trichocarpa HOM05D000189 ORTHO05D000474 2.1e-06 58.2 50 58.0
CSS0018764 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.7e-06 57.8 50 56.0
CSS0032360 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.7e-06 57.8 50 56.0
FAN16G1546 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.7e-06 57.8 50 56.0
Prupe.4G268000 Prunus persica HOM05D000189 ORTHO05D000474 2.7e-06 57.8 50 56.0
GSVIVG01037259001 Vitis vinifera HOM05D000189 ORTHO05D000474 3.5e-06 57.4 50 58.0
ClCG02G022920 Citrullus lanatus HOM05D000189 ORTHO05D000474 4.6e-06 57.0 41 65.9
Haze_23217 Corylus avellana HOM05D000189 ORTHO05D000474 4.6e-06 57.0 50 56.0
Dinv05061 Davidia involucrata HOM05D000189 ORTHO05D000474 4.6e-06 57.0 50 56.0
FAN11G3180 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.6e-06 57.0 50 56.0
Lalb_Chr17g0347991 Lupinus albus HOM05D000189 ORTHO05D000474 4.6e-06 57.0 50 56.0
MD03G1167700 Malus domestica HOM05D000189 ORTHO05D000474 4.6e-06 57.0 50 56.0
Ciclev10014100m.g Citrus clementina HOM05D000189 ORTHO05D000474 6.0e-06 56.6 50 58.0
Lalb_Chr10g0106331 Lupinus albus HOM05D000189 ORTHO05D000474 6.0e-06 56.6 50 56.0
Phvul.008G200300 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 6.0e-06 56.6 50 58.0
PGR102G3135 Punica granatum HOM05D000189 ORTHO05D000474 7.8e-06 56.2 50 54.0
TWI31G0708 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 7.8e-06 56.2 47 57.4
TWI79G0993 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 7.8e-06 56.2 50 54.0


User provided reference genes

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