Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 1.2e-249 865.9 418 100.0
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.2e-204 716.5 389 88.9
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.8e-203 712.6 391 88.0
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 2.2e-201 705.7 390 87.9
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 5.9e-199 697.6 390 86.9
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 2.1e-172 609.4 388 77.1
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 2.3e-171 605.9 402 74.1
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 8.8e-171 604.0 388 75.0
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 2.8e-169 599.0 385 75.6
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 8.3e-169 597.4 382 74.6
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 3.1e-168 595.5 383 77.0
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 4.1e-168 595.1 405 72.3
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 4.1e-168 595.1 326 85.0
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 5.4e-168 594.7 364 76.9
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 5.4e-168 594.7 380 74.7
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 7.0e-168 594.3 327 83.2
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.5e-167 592.0 392 73.7
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 3.5e-167 592.0 351 79.5
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 4.5e-167 591.7 390 74.1
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 4.5e-167 591.7 404 74.5
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.9e-167 591.3 393 74.3
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.9e-167 591.3 393 74.3
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 1.0e-166 590.5 400 73.0
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 1.0e-166 590.5 380 74.7
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 1.3e-166 590.1 340 81.2
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 6.6e-166 587.8 392 73.0
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 8.6e-166 587.4 392 73.2
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.1e-165 587.0 351 78.6
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.5e-165 586.6 394 72.1
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 4.3e-165 585.1 355 78.3
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 5.6e-165 584.7 347 78.1
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 5.6e-165 584.7 362 77.1
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 7.3e-165 584.3 381 74.5
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 7.3e-165 584.3 399 72.7
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 9.5e-165 583.9 385 73.2
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 1.6e-164 583.2 380 73.7
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 1.6e-164 583.2 371 76.0
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 2.1e-164 582.8 387 73.4
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 3.6e-164 582.0 380 73.7
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 6.1e-164 581.3 381 72.4
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.0e-163 580.5 382 72.8
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.0e-163 580.5 384 72.7
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 1.0e-163 580.5 340 78.8
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 1.4e-163 580.1 400 71.8
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.8e-163 579.7 394 71.1
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 2.3e-163 579.3 382 74.3
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 2.3e-163 579.3 380 72.9
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 2.3e-163 579.3 380 73.2
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 3.0e-163 578.9 390 72.6
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 6.8e-163 577.8 340 78.8
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 8.9e-163 577.4 386 72.5
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.5e-162 576.6 384 73.4
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 2.0e-162 576.2 340 78.5
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.6e-162 575.9 314 83.4
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 7.5e-162 574.3 390 72.1
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 7.5e-162 574.3 375 73.1
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 9.8e-162 573.9 362 76.0
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.7e-161 573.2 390 72.3
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 1.7e-161 573.2 383 73.1
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 2.2e-161 572.8 363 75.2
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 2.9e-161 572.4 390 72.3
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 2.9e-161 572.4 376 72.9
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 2.9e-161 572.4 394 72.6
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 4.9e-161 571.6 385 73.0
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 6.4e-161 571.2 314 85.7
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.8e-160 569.7 396 71.7
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 4.1e-160 568.5 377 72.1
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 5.4e-160 568.2 313 82.1
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 1.2e-159 567.0 405 70.1
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 2.7e-159 565.8 377 72.1
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 2.7e-159 565.8 377 72.1
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 7.8e-159 564.3 359 75.2
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.3e-158 563.5 323 80.8
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 6.6e-158 561.2 392 69.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 5.6e-157 558.1 394 68.8
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 1.6e-156 556.6 373 74.3
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 6.2e-156 554.7 401 68.6
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 3.1e-155 552.4 308 81.8
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.5e-154 550.1 376 71.3
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 2.6e-154 549.3 373 71.3
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 9.8e-154 547.4 398 66.8
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.3e-153 547.0 371 70.6
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 2.4e-152 542.7 381 71.4
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 1.2e-151 540.4 368 71.2
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.2e-151 540.4 335 76.4
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 1.0e-150 537.3 372 71.0
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.0e-150 537.3 390 69.0
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 8.6e-150 534.3 379 69.1
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 1.5e-149 533.5 351 71.2
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 1.9e-149 533.1 389 68.1
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 2.0e-146 523.1 386 66.1
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.1e-141 507.3 272 85.3
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 1.2e-138 497.3 262 86.6
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 2.0e-138 496.5 378 65.3
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 2.9e-137 492.7 501 56.3
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 1.4e-136 490.3 386 65.0
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 3.2e-136 489.2 272 83.5
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 3.3e-133 479.2 272 79.8
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 2.4e-128 463.0 435 56.3
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 3.5e-127 459.1 435 56.1
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 3.0e-126 456.1 335 66.9
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.4e-123 447.2 318 71.1
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 5.8e-122 441.8 318 69.2
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.7e-121 440.3 322 64.9
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 4.9e-121 438.7 310 65.8
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 4.2e-120 435.6 275 79.3
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 1.6e-116 423.7 330 61.5
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 6.2e-116 421.8 309 64.4
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.1e-115 421.0 344 62.2
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 4.0e-115 419.1 322 65.8
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 9.0e-115 417.9 247 77.3
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 1.9e-112 410.2 325 67.1
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 5.7e-101 372.1 316 58.2
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.5e-98 364.0 309 56.3
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 7.9e-95 351.7 390 47.2
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.0e-86 324.7 312 52.9
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 2.6e-85 320.1 170 87.1
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 2.0e-82 310.5 254 61.0
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 2.8e-76 290.0 160 83.1
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 7.5e-69 265.4 199 68.3
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.8e-65 253.1 147 80.3
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 4.4e-53 213.0 209 55.5
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 6.3e-52 209.1 300 38.0
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.7e-50 203.8 308 37.7
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 2.1e-47 194.1 307 37.5
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.2e-45 188.3 115 74.8
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 4.9e-44 183.0 101 80.2
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.4e-43 180.6 143 62.9
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 1.3e-41 174.9 306 36.6
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 2.3e-41 174.1 299 38.5
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.1e-38 165.2 307 33.6
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 6.8e-38 162.5 99 75.8
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 7.8e-34 149.1 125 60.8
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.3e-33 148.3 110 74.5
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.5e-29 134.8 74 75.7
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.2e-28 131.0 117 59.8
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 2.9e-28 130.6 175 42.9
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 2.4e-27 127.5 70 81.4
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 2.4e-27 127.5 70 81.4
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 2.7e-26 124.0 113 59.3
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 3.1e-22 110.5 250 35.6
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.1e-19 100.1 53 84.9
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 3.8e-12 77.0 41 80.5
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 3.8e-12 77.0 108 44.4
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.0e-09 67.4 38 86.8
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 2.4e-06 57.8 146 26.7
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 2.4e-06 57.8 28 85.7


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