Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 0.0e+00 1314.3 648 100.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 0.0e+00 1231.1 648 93.2
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 0.0e+00 1159.8 653 88.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 0.0e+00 1159.1 653 87.9
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 0.0e+00 1157.9 654 87.5
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 0.0e+00 1139.0 589 93.7
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 0.0e+00 1104.4 589 91.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 0.0e+00 1103.6 589 91.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 0.0e+00 1098.2 589 90.8
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.7e-309 1065.4 657 81.3
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.8e-309 1064.7 657 81.1
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.7e-307 1058.1 620 84.0
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.1e-305 1052.7 658 79.0
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.2e-303 1043.9 639 80.8
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 9.8e-302 1039.6 664 79.4
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.3e-301 1039.3 654 79.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.7e-301 1038.9 658 78.9
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.4e-300 1035.0 660 77.9
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 5.4e-300 1033.9 656 77.9
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.0e-299 1031.9 624 80.8
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.5e-299 1031.2 644 79.7
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 5.9e-299 1030.4 611 81.5
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.7e-299 1030.0 663 78.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.9e-298 1028.1 612 81.9
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 3.8e-298 1027.7 587 84.2
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.8e-298 1027.7 655 78.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 5.0e-298 1027.3 714 73.5
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.3e-297 1024.2 656 77.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.2e-296 1022.7 660 77.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 613 81.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.0e-295 1019.6 682 76.0
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.4e-295 1019.2 652 77.1
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.0e-294 1015.4 589 83.0
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 7.5e-294 1013.4 660 75.9
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 9.8e-294 1013.1 659 77.1
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 2.9e-293 1011.5 589 83.0
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 3.7e-293 1011.1 650 78.3
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.4e-292 1007.3 642 77.4
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 7.0e-292 1006.9 567 84.0
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 3.5e-291 1004.6 653 76.1
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 3.5e-291 1004.6 651 76.8
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 7.8e-291 1003.4 650 76.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 8.6e-290 1000.0 676 74.9
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.5e-289 999.2 632 77.1
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.9e-289 998.8 599 79.8
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.5e-289 998.4 647 77.4
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.5e-289 996.5 650 77.4
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.6e-288 995.7 643 76.5
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 2.1e-288 995.3 664 75.2
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 3.6e-288 994.6 634 76.7
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.8e-287 992.3 643 76.7
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.8e-287 992.3 583 81.0
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.8e-287 992.3 588 79.8
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.8e-287 992.3 634 77.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.3e-287 991.9 660 75.8
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 6.8e-287 990.3 586 82.1
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.0e-286 988.8 583 81.0
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.6e-286 988.4 650 76.0
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.8e-286 987.3 643 75.7
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 9.8e-286 986.5 579 81.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.7e-285 985.7 627 75.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.2e-285 985.3 632 76.3
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 2.2e-285 985.3 642 76.2
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 4.9e-285 984.2 580 81.2
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 6.4e-285 983.8 632 76.4
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.9e-284 982.2 644 75.0
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.9e-284 982.2 545 84.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.1e-284 981.1 592 79.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 5.4e-284 980.7 589 79.3
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 5.4e-284 980.7 641 75.5
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.2e-283 979.5 634 75.2
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.2e-283 979.5 580 80.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.0e-283 978.8 643 75.1
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.6e-283 977.6 648 73.9
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 4.6e-283 977.6 586 80.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.0e-283 977.2 621 76.8
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.0e-282 976.5 642 76.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.7e-282 975.7 587 79.2
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.1e-281 973.0 643 74.3
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.1e-281 973.0 580 80.5
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 7.3e-281 970.3 599 77.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.1e-280 968.8 569 80.7
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.8e-280 968.4 547 83.9
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.8e-280 968.4 627 75.9
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 8.1e-280 966.8 627 75.8
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.5e-278 962.6 638 74.6
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.4e-278 961.4 642 74.3
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 3.4e-278 961.4 635 74.8
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 4.4e-278 961.1 642 74.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 4.4e-278 961.1 570 80.2
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.7e-277 959.1 554 81.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 4.1e-276 954.5 528 86.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.7e-275 951.8 550 82.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 7.8e-275 950.3 640 73.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.3e-274 949.5 755 66.4
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.7e-274 949.1 531 83.8
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 6.6e-274 947.2 640 73.4
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.5e-273 946.0 582 76.6
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.4e-271 939.5 586 76.5
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-271 939.5 639 72.0
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-271 939.1 619 76.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.5e-270 936.0 641 73.2
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.9e-269 931.8 640 73.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.9e-269 931.8 640 73.0
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 8.4e-269 930.2 563 78.3
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.0e-266 923.3 645 72.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 6.2e-264 914.1 581 76.1
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 4.9e-261 904.4 649 70.6
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.2e-260 901.7 532 79.5
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 7.1e-260 900.6 642 71.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 6.9e-255 884.0 589 74.7
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.7e-253 879.4 553 74.9
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.4e-252 874.4 645 70.2
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 4.5e-246 854.7 558 76.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 6.5e-237 824.3 447 88.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.1e-235 819.3 610 69.2
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 3.5e-235 818.5 447 87.7
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 3.9e-234 815.1 593 66.1
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.1e-233 813.5 548 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.5e-233 813.1 549 71.0
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 9.0e-231 803.9 590 65.6
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.8e-229 798.5 438 86.5
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 9.4e-212 740.7 517 70.2
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.0e-202 709.1 520 69.0
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.9e-196 689.9 452 73.2
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.0e-186 657.5 538 59.9
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.6e-177 626.3 361 80.6
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.4e-169 599.4 344 83.4
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-163 580.5 562 56.8
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 5.8e-153 545.4 374 74.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 3.3e-148 529.6 557 54.6
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.1e-147 526.9 560 49.6
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 3.6e-147 526.2 418 65.1
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.6e-142 510.8 278 87.8
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 2.3e-141 506.9 280 83.6
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 6.2e-139 498.8 350 73.1
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.5e-118 429.9 574 44.1
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 2.4e-114 417.2 288 68.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.8e-96 356.7 643 36.5
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 5.2e-93 346.3 264 69.3
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.5e-92 344.7 184 87.5
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-84 317.8 179 84.9
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 4.8e-83 313.2 592 36.8
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.1e-82 312.0 188 76.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.4e-82 310.8 179 83.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.5e-80 302.8 167 85.6
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 8.5e-80 302.4 503 37.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.8e-77 292.7 582 34.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.0e-69 268.9 321 49.2
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.2e-67 261.2 140 89.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 6.3e-67 259.6 610 33.8
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 4.5e-65 253.4 159 74.2
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.5e-60 238.4 596 30.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.5e-52 209.5 117 85.5
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 3.2e-50 204.1 120 84.2
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 2.8e-46 191.0 107 84.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.6e-44 184.5 98 88.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 3.5e-41 174.1 155 58.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-39 168.3 134 64.2
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-31 142.5 117 64.1
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 5.3e-29 133.7 81 74.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 9.0e-29 132.9 65 93.8
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.6e-28 131.3 137 49.6
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 4.4e-28 130.6 67 88.1
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 6.4e-27 126.7 98 63.3
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.0e-20 105.1 63 74.6
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 4.5e-12 77.4 78 56.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 7.6e-12 76.6 72 54.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-11 75.5 54 70.4
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.0e-09 67.0 72 52.8
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.9e-07 62.0 38 65.8
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 4.3e-07 60.8 72 48.6


User provided reference genes

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