Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 3.8e-137 491.5 247 100.0
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.4e-110 403.3 248 84.3
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 3.0e-110 402.1 248 83.9
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 5.1e-110 401.4 248 83.9
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.3e-105 386.7 247 82.2
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.0e-102 377.1 212 90.6
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 5.5e-96 354.8 248 75.4
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 9.4e-96 354.0 256 75.4
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 8.0e-95 350.9 259 73.0
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.8e-94 349.7 255 71.8
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.8e-94 349.7 255 71.8
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 6.8e-94 347.8 263 69.6
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 1.2e-93 347.1 256 71.1
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 2.0e-93 346.3 259 74.1
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.7e-92 343.2 261 71.3
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 4.1e-91 338.6 232 78.9
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 5.4e-91 338.2 265 69.4
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 1.2e-90 337.0 282 67.4
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 1.6e-90 336.7 226 77.0
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.6e-90 336.7 262 70.2
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.0e-90 336.3 262 71.0
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.7e-90 335.9 263 70.7
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.9e-90 334.7 262 70.6
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 5.9e-90 334.7 256 70.7
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 5.9e-90 334.7 214 79.4
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 7.7e-90 334.3 261 71.6
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 1.0e-89 334.0 273 66.7
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.0e-89 334.0 263 69.6
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 1.3e-89 333.6 250 68.8
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 1.3e-89 333.6 250 68.8
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 5.0e-89 331.6 259 66.4
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 5.0e-89 331.6 250 73.6
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 8.5e-89 330.9 247 71.3
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 8.5e-89 330.9 260 70.8
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 1.1e-88 330.5 251 68.9
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.1e-88 330.5 307 63.2
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.5e-88 330.1 260 69.6
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 1.9e-88 329.7 264 69.3
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.9e-88 329.7 260 69.6
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 3.2e-88 328.9 249 67.9
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 3.2e-88 328.9 250 68.0
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 4.2e-88 328.6 249 68.3
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 4.2e-88 328.6 249 68.3
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 4.2e-88 328.6 249 68.3
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 5.5e-88 328.2 267 67.0
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 7.2e-88 327.8 249 71.5
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 9.4e-88 327.4 259 68.0
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.6e-87 326.6 252 67.5
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.1e-87 326.2 260 68.5
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.7e-87 325.9 271 66.8
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 3.6e-87 325.5 260 68.1
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 3.6e-87 325.5 264 68.6
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 6.1e-87 324.7 251 66.9
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 6.1e-87 324.7 251 68.1
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 6.1e-87 324.7 266 68.4
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 8.0e-87 324.3 232 71.6
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.4e-86 323.6 254 70.5
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 1.8e-86 323.2 252 66.3
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 8.8e-86 320.9 184 85.3
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 8.8e-86 320.9 255 68.2
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 8.8e-86 320.9 256 68.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.5e-85 320.1 254 66.5
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 2.6e-85 319.3 247 70.4
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 3.4e-85 318.9 250 67.6
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 3.4e-85 318.9 260 66.5
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 4.4e-85 318.5 251 66.9
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 5.7e-85 318.2 254 67.3
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 9.8e-85 317.4 235 71.1
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 9.8e-85 317.4 259 68.7
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 3.7e-84 315.5 253 66.8
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.4e-83 312.8 222 74.3
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 3.1e-83 312.4 254 64.2
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 4.1e-83 312.0 235 66.8
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 5.4e-83 311.6 235 66.8
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 7.0e-83 311.2 247 68.8
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 5.9e-82 308.1 243 67.5
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 5.9e-82 308.1 225 70.7
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.0e-81 307.4 239 70.3
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 1.0e-81 307.4 253 64.8
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 2.3e-81 306.2 231 70.1
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 2.9e-81 305.8 253 65.2
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 6.6e-81 304.7 258 64.3
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 8.6e-81 304.3 244 68.4
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.5e-80 303.5 236 69.1
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 4.2e-80 302.0 220 70.9
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 9.5e-80 300.8 250 66.8
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.1e-79 299.7 248 65.7
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 1.0e-78 297.4 258 64.3
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 5.2e-78 295.0 258 63.2
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 8.9e-78 294.3 245 64.9
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.2e-77 293.9 248 64.1
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.6e-77 292.7 173 82.1
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 3.4e-77 292.4 189 75.7
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.1e-75 287.3 258 61.6
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 2.4e-75 286.2 200 73.0
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 4.1e-75 285.4 225 67.6
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 5.4e-75 285.0 256 59.0
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.3e-73 280.4 252 62.7
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 3.9e-73 278.9 255 59.6
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 2.1e-71 273.1 221 65.2
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.0e-67 258.1 139 87.1
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 1.7e-65 253.4 190 68.9
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 4.3e-64 248.8 232 61.2
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.2e-63 247.3 185 69.7
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 1.0e-57 227.6 122 87.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 3.6e-55 219.2 198 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.9e-48 196.8 192 53.6
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.5e-45 187.2 183 59.6
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 8.4e-44 181.4 105 83.8
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 2.4e-43 179.9 191 50.8
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 2.4e-43 179.9 204 48.0
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 3.4e-37 159.5 181 52.5
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 9.9e-37 157.9 245 41.6
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 1.9e-35 153.7 122 58.2
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.0e-33 146.4 105 71.4
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.3e-31 141.0 104 70.2
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.9e-30 135.2 71 88.7
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.1e-24 117.9 108 57.4
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.2e-23 112.1 85 70.6
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 6.9e-22 108.6 136 55.9
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 4.6e-18 95.9 56 82.1
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 2.3e-17 93.6 124 52.4
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.1e-16 91.3 110 59.1
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.9e-16 90.5 134 48.5
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.6e-15 87.4 49 79.6
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.8e-14 84.0 108 52.8
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 2.6e-13 80.1 109 48.6
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 9.3e-11 71.6 105 48.6
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 8.7e-09 65.1 55 63.6


User provided reference genes

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