Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 2.4e-248 861.7 429 100.0
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 5.7e-181 637.9 433 76.9
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 7.4e-181 637.5 433 77.6
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 7.4e-181 637.5 433 76.9
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.7e-180 636.3 433 76.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.1e-152 543.9 421 67.0
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.2e-152 542.0 401 68.8
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.2e-152 541.2 410 67.6
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.0e-150 535.8 433 64.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.1e-147 527.3 406 67.2
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.0e-146 523.1 396 66.9
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.3e-145 519.6 378 69.0
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.1e-143 513.1 356 72.8
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 2.1e-143 513.1 393 67.4
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 3.0e-142 509.2 393 66.4
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.2e-141 507.3 388 66.0
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 9.5e-136 487.6 392 63.5
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.2e-135 487.3 394 62.7
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.6e-135 486.9 401 63.1
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.4e-134 483.8 402 61.9
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.2e-133 480.7 330 71.8
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.2e-133 480.7 383 65.8
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.2e-133 480.7 397 63.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 7.5e-133 478.0 398 62.1
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 9.8e-133 477.6 371 64.4
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 9.8e-133 477.6 343 68.8
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 2.2e-132 476.5 350 67.4
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 9.2e-131 471.1 343 66.5
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 8.6e-129 464.5 400 57.8
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 8.6e-129 464.5 434 57.6
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.1e-128 464.2 386 60.6
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 3.3e-128 462.6 336 65.8
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 6.2e-127 458.4 335 68.4
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 6.2e-127 458.4 371 62.5
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 8.9e-126 454.5 350 63.7
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.2e-124 449.9 300 74.0
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 8.3e-124 448.0 350 63.7
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 2.4e-123 446.4 426 56.6
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 4.1e-123 445.7 375 61.1
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 5.4e-123 445.3 350 62.9
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 3.5e-122 442.6 360 60.6
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.0e-121 441.0 398 57.5
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 3.9e-121 439.1 343 64.7
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 1.1e-120 437.6 409 56.5
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.5e-120 437.2 424 55.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.5e-120 436.4 343 64.4
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 5.6e-120 435.3 408 55.4
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 7.3e-120 434.9 431 60.3
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 2.1e-119 433.3 376 58.8
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.1e-118 431.0 393 58.8
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 3.1e-118 429.5 410 57.6
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 2.6e-117 426.4 397 55.7
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 4.4e-117 425.6 412 55.3
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 4.4e-117 425.6 356 59.0
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 5.8e-117 425.2 337 62.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.5e-117 424.9 288 72.6
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 9.9e-117 424.5 373 57.4
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 9.9e-117 424.5 336 61.9
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.7e-116 423.7 399 57.6
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 2.2e-116 423.3 426 56.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.9e-116 422.9 412 54.4
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 2.9e-116 422.9 373 57.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 3.7e-116 422.5 412 54.4
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.1e-115 421.0 373 57.4
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.9e-115 420.2 431 52.9
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 3.2e-115 419.5 382 57.3
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 7.1e-115 418.3 316 65.2
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 9.2e-115 417.9 324 62.7
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 2.7e-114 416.4 342 60.8
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 7.8e-114 414.8 383 55.9
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.3e-113 414.1 337 59.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.1e-112 411.0 433 52.7
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.9e-112 410.2 330 61.5
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 1.9e-112 410.2 420 52.6
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 7.3e-112 408.3 364 57.1
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.8e-111 406.4 330 63.6
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 8.1e-111 404.8 392 55.1
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.1e-110 404.4 343 58.3
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 6.8e-110 401.7 315 63.8
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 2.0e-109 400.2 433 51.0
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.9e-107 393.7 335 60.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.4e-107 393.3 408 58.3
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 3.0e-105 386.3 247 74.5
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.5e-104 384.0 416 49.3
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.9e-104 383.6 353 57.2
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.1e-103 380.2 328 58.5
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 1.2e-101 374.4 370 52.7
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.2e-98 364.4 370 53.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.0e-97 361.3 247 70.9
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 4.8e-95 352.4 339 51.0
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 8.1e-95 351.7 356 53.1
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 5.8e-93 345.5 343 52.8
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 2.2e-92 343.6 233 71.7
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 2.2e-92 343.6 331 51.4
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 7.1e-91 338.6 439 46.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 5.1e-89 332.4 374 48.7
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.1e-86 324.7 304 55.9
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 4.6e-82 309.3 249 63.9
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 6.0e-82 308.9 294 54.1
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.1e-80 304.7 219 67.1
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 4.0e-78 296.2 299 50.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.1e-67 261.5 206 63.6
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 6.5e-60 235.7 180 66.1
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 4.5e-45 186.4 150 60.7
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.5e-43 180.6 168 56.5
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.6e-40 170.6 297 38.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 3.7e-39 166.8 199 47.7
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.8e-33 147.9 149 52.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.2e-29 135.2 339 28.3
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 4.6e-21 106.7 132 41.7
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 9.5e-19 99.0 164 39.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 4.7e-18 96.7 249 30.9
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.2e-13 82.0 175 33.7
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 1.6e-13 81.6 231 31.6
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 2.7e-13 80.9 249 30.9
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.0e-12 79.0 188 33.0
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.7e-12 78.2 202 32.7
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.9e-12 77.0 187 34.2
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 6.6e-12 76.3 203 32.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.1e-11 75.5 188 32.4
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 3.3e-11 73.9 186 33.3
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 5.6e-11 73.2 192 33.3
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.1e-10 71.2 185 33.0
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 4.7e-10 70.1 199 31.2
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 4.7e-10 70.1 195 29.7
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.4e-09 68.6 198 32.8
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 1.8e-09 68.2 196 29.1
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.8e-09 68.2 202 31.7
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.1e-09 67.4 196 31.6
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 3.1e-09 67.4 196 31.6
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 5.2e-09 66.6 188 31.9
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 6.8e-09 66.2 200 29.5
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 6.8e-09 66.2 200 29.5
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 6.8e-09 66.2 184 30.4
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 1.2e-08 65.5 190 31.6
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.2e-08 65.5 191 31.4
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.2e-08 65.5 185 30.8
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.6e-08 64.3 184 33.2
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 3.4e-08 63.9 185 30.3
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 3.4e-08 63.9 193 30.1
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 5.8e-08 63.2 184 32.6
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 7.5e-08 62.8 195 29.2
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 9.8e-08 62.4 156 29.5
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.3e-07 62.0 158 27.8
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.7e-07 61.6 185 29.7
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 1.7e-07 61.6 141 28.4
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.7e-07 61.6 205 28.8
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.2e-07 61.2 201 28.9
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 3.7e-07 60.5 154 33.8
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 4.9e-07 60.1 47 55.3
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 8.3e-07 59.3 183 26.8
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.1e-06 58.9 225 26.7
TPR.G28387 Trifolium pratense HOM05D001779 ORTHO05D001753 1.1e-06 58.9 128 28.1
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.4e-06 58.5 205 30.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-06 58.5 192 29.7
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 1.4e-06 58.5 189 28.0
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 1.9e-06 58.2 211 28.9
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.4e-06 57.8 156 32.1
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 4.1e-06 57.0 155 30.3
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 5.4e-06 56.6 140 27.1
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 5.4e-06 56.6 163 25.2
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 5.4e-06 56.6 231 19.0
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 7.1e-06 56.2 202 26.7
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 9.2e-06 55.8 158 25.3
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 9.2e-06 55.8 190 31.6
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.2e-06 55.8 163 25.2
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 9.2e-06 55.8 198 26.8
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 9.2e-06 55.8 164 25.6


User provided reference genes

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