Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 0.0e+00 1273.5 668 100.0
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 0.0e+00 1153.7 668 89.4
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 0.0e+00 1096.6 672 85.1
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 0.0e+00 1090.5 672 84.7
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 0.0e+00 1090.5 668 84.7
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 0.0e+00 1086.2 668 84.4
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.5e-292 1009.2 672 79.8
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 7.2e-292 1006.9 668 79.5
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 7.3e-276 953.7 666 74.6
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 2.1e-275 952.2 657 74.0
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 3.1e-274 948.3 679 71.1
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.3e-272 943.0 669 73.4
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 6.4e-272 940.6 669 70.6
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 7.8e-270 933.7 668 71.6
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.3e-269 932.9 669 70.0
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.2e-267 926.4 666 72.5
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.3e-264 916.4 669 69.5
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 8.3e-264 913.7 666 70.7
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 1.4e-263 912.9 666 70.6
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 9.2e-263 910.2 667 69.7
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.1e-260 903.3 669 71.6
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 1.5e-260 902.9 666 69.8
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.6e-259 899.4 666 69.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.2e-259 897.5 663 69.7
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.2e-255 885.2 670 69.3
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.3e-253 879.0 682 66.9
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.3e-253 879.0 682 66.9
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 9.6e-252 873.6 668 66.9
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.4e-250 869.0 670 65.4
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.4e-247 859.8 669 70.0
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.2e-247 858.2 640 69.2
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 9.6e-244 847.0 667 66.1
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 2.0e-241 839.3 666 67.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.3e-240 836.6 668 66.9
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.7e-240 836.3 674 68.0
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 4.9e-240 834.7 666 67.0
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.4e-240 834.3 636 66.8
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.1e-239 830.9 923 50.9
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 2.1e-238 829.3 664 67.0
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 5.1e-237 824.7 675 64.1
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 5.1e-237 824.7 668 65.3
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 9.6e-236 820.5 670 65.7
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.3e-235 820.1 666 66.4
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.7e-235 818.5 675 65.9
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 1.8e-234 816.2 664 66.3
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.8e-234 816.2 764 58.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 2.4e-234 815.8 587 70.9
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 6.9e-234 814.3 667 63.3
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 1.2e-233 813.5 670 65.8
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.5e-233 813.1 678 65.8
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 9.9e-233 810.4 670 65.7
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 4.9e-232 808.1 670 65.4
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.4e-231 805.8 694 62.2
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.1e-230 802.7 670 64.8
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 2.3e-229 799.3 660 64.7
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 3.9e-229 798.5 674 64.5
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 8.7e-229 797.3 669 61.0
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.5e-228 795.8 669 61.1
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 4.8e-227 791.6 667 62.2
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.1e-226 788.9 673 61.2
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 1.3e-224 783.5 679 61.0
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 1.3e-224 783.5 640 66.7
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.7e-224 783.1 665 62.6
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 1.9e-223 779.6 668 61.1
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 2.5e-223 779.2 670 63.9
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 9.3e-223 777.3 662 63.6
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.2e-222 776.9 663 61.8
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.2e-222 776.9 666 60.8
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 1.3e-221 773.5 661 63.1
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 2.3e-221 772.7 670 63.6
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 1.1e-220 770.4 668 62.7
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 1.9e-220 769.6 671 62.7
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 9.7e-220 767.3 667 64.8
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 3.7e-219 765.4 685 60.9
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 8.2e-219 764.2 672 62.5
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 1.1e-218 763.8 661 61.3
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 3.1e-218 762.3 664 60.5
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 9.0e-218 760.8 667 62.2
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.6e-217 759.2 667 62.1
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 6.5e-216 754.6 673 61.5
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 3.2e-215 752.3 668 61.1
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 6.1e-214 748.0 649 60.4
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 7.9e-214 747.7 670 61.3
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 8.8e-213 744.2 667 60.0
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-210 737.3 637 59.8
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 6.5e-208 728.0 744 53.2
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 3.2e-207 725.7 671 58.3
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.2e-207 725.7 679 58.5
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.2e-206 723.8 667 56.5
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 1.0e-205 720.7 671 57.4
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 4.4e-204 715.3 667 56.7
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 8.5e-200 701.0 671 55.0
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 2.8e-195 686.0 669 53.8
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 4.0e-189 665.6 493 69.6
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 9.7e-188 661.0 673 52.2
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 7.0e-186 654.8 681 55.4
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 8.5e-184 647.9 676 52.1
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 9.8e-180 634.4 633 53.7
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 4.5e-169 599.0 672 49.9
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 7.3e-167 591.7 554 56.3
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.2e-157 558.9 527 56.0
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.5e-156 557.4 673 45.9
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 3.4e-156 556.2 719 43.4
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 6.8e-141 505.4 663 43.7
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.0e-132 477.2 552 49.5
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.4e-124 449.9 389 64.5
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 4.2e-98 363.2 299 64.5
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.6e-92 344.0 542 42.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 1.3e-91 341.7 725 33.1
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 5.3e-77 293.1 674 31.9
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.3e-72 277.7 656 28.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-58 231.5 167 71.9
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 9.5e-58 229.2 366 41.5
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 5.4e-45 186.8 163 60.1
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 8.9e-40 169.5 140 65.0
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 2.6e-39 167.9 479 28.8
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 3.5e-36 157.5 136 63.2
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 3.9e-27 127.5 253 42.7
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 2.1e-25 121.7 101 75.2
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.0e-23 115.2 58 89.7
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.3e-22 112.5 180 46.7
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.3e-22 112.5 170 39.4
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 3.3e-18 97.8 88 55.7
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.9e-14 84.7 52 73.1
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 7.9e-12 76.6 75 54.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 2.3e-11 75.1 49 71.4
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.8e-09 67.4 37 89.2
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.4e-08 65.1 37 86.5
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 3.4e-07 61.2 130 35.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 3.8e-06 57.8 72 47.2


User provided reference genes

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